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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCAAAATCACTGCCAAACCAGTGCCTAGGTCATTTTGCACTTCAGCAGCTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttctctttctccctctcttttttctaaaatctcggttaccctgctttattaaatccatttggaacaaccccaattctgtgctgtaattcccaat...

Basic information

species Vitis vinifera
transcript Vv09s0002g08480.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045807|gb|FQ440992.1|FQ440992
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351032149|gb|FQ460406.1|FQ460406
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351035816|gb|FQ463661.1|FQ463661
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351054048|gb|FQ441814.1|FQ441814
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351053731|gb|FQ441497.1|FQ441497
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351047232|gb|FQ454843.1|FQ454843
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351035068|gb|FQ458425.1|FQ458425
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|22012389|gb|BQ797423.1|BQ797423
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAAT
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAAT
EST: gi|351057094|gb|FQ450801.1|FQ450801
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351032442|gb|FQ458807.1|FQ458807
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351035596|gb|FQ463441.1|FQ463441
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351055356|gb|FQ441954.1|FQ441954
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351046818|gb|FQ454428.1|FQ454428
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351035928|gb|FQ463773.1|FQ463773
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351046011|gb|FQ441394.1|FQ441394
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351042210|gb|FQ442677.1|FQ442677
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351038021|gb|FQ460763.1|FQ460763
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351035096|gb|FQ458453.1|FQ458453
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351031928|gb|FQ460185.1|FQ460185
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351042201|gb|FQ442668.1|FQ442668
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349808218|gb|FQ403405.1|FQ403405
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351044422|gb|FQ442953.1|FQ442953
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351034896|gb|FQ458253.1|FQ458253
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|110699271|gb|EE076123.1|EE076123
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|352764316|gb|FQ471296.1|FQ471296
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTAGAAATAGGAGAGCCAAATGAAGGTAAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|352789828|gb|FQ478643.1|FQ478643
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351053674|gb|FQ440183.1|FQ440183
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|352798966|gb|FQ480815.1|FQ480815
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349828369|gb|FQ416322.1|FQ416322
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349812535|gb|FQ407154.1|FQ407154
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349832934|gb|FQ423056.1|FQ423056
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|110724513|gb|EE100407.1|EE100407
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349824576|gb|FQ413243.1|FQ413243
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|349819399|gb|FQ412293.1|FQ412293
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
EST: gi|351032220|gb|FQ460477.1|FQ460477
EST:     CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAG                         GTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC
genomic: CTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttct ... atgatgatagGTCCTGAAGTGGGAGGATGTTGAAATAGGAGAGCCAAATGAGGGTGAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCAAAATCACTGCCAAACCAGTGCCTAGGTCATTTTGCACTTCAGCAGCTGCAACCATGGTAAAAGCCATCAGGGTTCATGAACTTGGTGGTCCTGAGgtctgtttctctttctccctctcttttttctaaaatctcggttaccctgctttattaaatccatttggaacaaccccaattctgtgctgtaattcccaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaa