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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTTCGATTTTGAAGGGATAATGTCTGTTCCTGTGTCCTCCATCATTGGTCATTGCCTTGAGGGCCTCAGTCTCTGGACCCTCAATCCTCATACTAGgtttgctctcatctcctcctgcttgcatccacaatgtctctttcgttgtattgatatatacctccttatatgctcaactgtgttcatcttgatatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g07010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G80090.1 (Arabidopsis thaliana), 5'ss of exon 2
ATGGGTTCGATTTTGAAGGGATAATGTCTGTTCCTGTGTCCTCCATCATTGGTCATTGCCTTGAGGGCCTCAGTCTCTGGACCCTCAATCCTCATACTAGgtttgctctcatctcctcctgcttgcatccacaatgtctctttcgttgtattgatatatacctccttatatgctcaactgtgttca-tcttgatatgcag----
  | |   |   ||||   || |||| |||  ||||| || || |||||||||||||||| |||||| || || |||||| | ||||||||| |||| |||||       |           ||| |     ||  |   ||  ||   ||| ||   | |||  |   ||| |  |   ||| || | ||   |   ||    
GCGAGAGTGGGCTTGATAAGAAAATGGCTGCCCCTGTCTCTTCTATCATTGGTCATTGCCCTGAGGGTCTTAGCCTCTGGTCTCTCAATCCTAATACCAGgttaat----agtatagaagatttgtaaaattaaattgctttcagtataattaatccttcccttttataatgttagatgttgtacacttttctcacatagtaag