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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACATTCACATTCTCGAACATGGTACAGACAAAGAAGTTCAGAGGAGTCAGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTgtattctccacattcctttcttctaattcttgtccttctcttcatgtatctactgtatttttgttttcctcatctcttttaggcaattttcatgttagtttcaaatgcatattctttgttgtgctttgtag

Basic information

species Vitis vinifera
transcript Vv09s0002g06750.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77587617|gb|DV222983.1|DV222983
EST:     AGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACT                         CAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCGCTCG
genomic: AGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTgtattctcca ... tgctttgtagCAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCGCTCG
EST: gi|110380465|gb|EC945733.1|EC945733
EST:     AGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACT                         CAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCG
genomic: AGGCAGCGCCACTGGGGCTCCTGGGTCGCTGAAATTCGCCACCCTTTACTgtattctcca ... tgctttgtagCAAGAGGAGGGTGTGGTTAGGGACGTTTGAGACTGCAGAAGAGGCCG