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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATGTGCTCTGCTCTGCTTTGATTCTCTCTGCTCAAAAGATTgtctgcttttgtccttgtctttacctctccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtgcacacaagcatagtgttgcatattcatatgttttattccattttcaccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g06010.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g06010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G01350.1 (Glycine max), 5'ss of exon 1
---------------------------------------------------------ATGAATGTGCTCTGCTCTGCTTTGATTCTCTCTGCTCA-AAAGATTgtctgcttttgtccttgtctttacctctccttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtgcacacaagcatagtgttgcatattcatatgttttattccattttcaccctacccatttgtgtataaatacagtttctcattttgggttttcttcattgcag
                                                         |||| ||||||||||||||||||||||||||||||||| |||| ||  ||||||||||| ||||||||||||||||||||||||||| | ||             |||||| |||| |||   || | | |||    |  ||| |  ||| |   |||||||||| |  ||||||||||  | |||| ||||| | || |||||||      |   |||  ||  |||||||||||||||
ATTCTCATAGAGAGTCCAGAGAGAGCCCTCTCTCCTAGCTGTGCAGCAGAGGAATGGATGATTGTGCTCTGCTCTGCTTTGATTCTCTCTGCTCATAAAGgtttcctgcttttgtctttgtctttacctctccttttcatggataccct-------------tctaggaggttgcagcagcactctatagtcactatacata--catggcaatgcatattcacacattttattccaactccaccatacccttctgggtataaaggggcatcaccatcctgcattttcttcattgcag

upper sequence: Vv09s0002g06010.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G43990.1 (Glycine max), 5'ss of exon 2
----------------------------------------------------ATGAATGTGCTCTGCTCTGCTTTG-----ATTCTCTCTGCTCA-AAAGATTgtctgcttttgtccttgtctttacctctc--cttttcatggatgctctatctttttgagtttctaggcggtttcaggcacaatgtgtagctggtg--cacaca-agcatagtgttgcatattcatatgttttattccattttcaccctaccc------atttgtgtataaatacagtttctcattttgggttttcttcattgcag
                                                     | | |||||||||||||||||||     |||||||||||||| |||| ||  ||||||||||| |||||||||||||||  |||||||||||| | ||             |||| |||||| |||   || | | |||    |    | ||| | ||| |   |||||||||| | |||||||||||  | |||| |||||       | || |||||||      |    ||  ||  |||||||||||||||
TCTCTCTATGTGAGAGTCCTCTCTCCTAGCTGTGCAGCTTAGGAATGGATGATTAATTGTGCTCTGCTCTGCTTTGCTTTGATTCTCTCTGCTCATAAAGgtttcctgcttttgtctttgtctttacctctctccttttcatggataccct-------------tctaagcggttgcagctgcactctatagtcactaactaaacataacatggcaatgcatattcacacgttttattccaagtccaccatacccttcttcttctgggtataaaggggcatcactatcctgcattttcttcattgcag