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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGGCGCGGCTCCCAGGACCAAAGTGGTGGGTCGGGTTTTCACGTCCAATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgttttattttaacaggtcatgatgaaggggatttttttttttttttaattatcttattttaatttttttcccgtaatttttggatatttggaatcccagatttggtcgattttgttgaagactctgggcttttctgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03450.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g09430.1 (Oryza sativa), 5'ss of exon 1
CGGCGGCGCGGCTCCCAGGACCAAAGTGGTGGGTCGGGTTTTCACGTCCAATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgttttattttaacaggtcatgatgaaggggatttttttttttttttaattatcttattttaatttttttcccgtaatttttggatatttggaatcccagatttggtcgattttgttgaagactctgggcttttctgcag
||||||||| || ||  ||| ||| |||||||| || || |||||  |||| ||||| ||||| || |||||||||||||| |||||||| ||||| ||||| |    ||   | ||||  ||    |||    |||    ||       |||  | |   |  ||  || | |   |  ||       |  ||  ||  || || || |   ||| ||| |                     
CGGCGGCGCCGCCCCGCGGAGCAACGTGGTGGGGCGTGTCTTCACCGCCAACGAGTCGCCGCCCGACCAGAAGATCCCCTTCCACCACGAGATGGCGCAGgtccaccatacaatcacag--caaatcgaatccaattcgagttcaagaa-aatgctttcgctacaagcttatactaatgtttaaaattaagctgagatttcatatatgtt---tttggttcag--------------------

upper sequence: Vv09s0002g03450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G141665_T01 (Zea mays), 5'ss of exon 1
CGGCGGCGCGGCTCCCAGGACCAAAGTGGTGGGTCGGGTTTTCACGTCCAATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgttttattttaacaggtcatgatgaaggggatttttttttttttttaattatcttattttaatttttttcccgtaatttttggatatttggaatcccagatttggtcgattttgttgaagactctgggcttttctgcag
||||||||| || ||  ||||||| || ||||| ||||| |||||  |||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||            | |  ||| |||                 |    |  | | |   |   |||         ||   |   || |  |  |||  |   |   ||| | |     |  |   |                 
CGGCGGCGCCGCGCCGCGGACCAACGTCGTGGGCCGGGTGTTCACCGCCAACGAGTCGCCGCCCGATCAGAAGATCCCCTTCCACCACGAGATGGCCCAGgta-----------atcgagtcttgag--------------cctcccctgcactctggcaccataagagcagcagcggggtaactgaaattcaggagacaacgcagtggcc-acgacatgtacatc-----------------

upper sequence: Vv09s0002g03450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G165769_T01 (Zea mays), 5'ss of exon 1
CGGCGGCGCGGCTCCCAGGACCAAAGTGGTGGGTCGGGTTTTCACGTCCAATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtt-ttattttaacaggtcatgatgaaggggatttttttttttttttaattatcttattttaatttttttcccgtaatttttggatatttggaatcccagatttggtcgattttgttgaagactctgggcttttctgcag
|||| |||  || ||  ||||||| || ||||| ||||| |||||  |||| || || ||||| ||||||||||||||||| |||||||| |||||||||||       | ||  | ||  ||    || ||       | |  |     |     |     ||| |    || ||  |  | ||||    | || |                                               
CGGCAGCGTCGCGCCGCGGACCAACGTCGTGGGCCGGGTGTTCACCGCCAACGACTCGCCGCCCGATCAGAAGATCCCCTTCCACCACGAGATGGCTCAGgtaatcgactgttgaaccatctccccctgcagtctgcagtctggtggcactggcacttggtctttgaaacattgcctttggtctttgaccgtatgtacct--------------------------------------------

upper sequence: Vv09s0002g03450.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G21360.1 (Arabidopsis thaliana), 5'ss of exon 1
CGGCGGCGCGGCTCCCAGGACCAAAGTGGTGGGTCGGGTTTTCACGTCCAATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgttttattttaa-caggtcatgatgaaggggatttttttttttttttaattatcttattttaatttttttcccgtaatttttggatatttggaatcccagatttggtcgattttgttgaagactctgggcttttctgcag
||| ||||| |||||  | || |  || || ||||| || |||||  | ||||| || || || ||||||||||| || ||||||||||| |||||||||||    || ||   || ||| |   | |  | | || |||  ||||||   |  ||   | ||    ||| ||     | |||  ||| | ||||  |                                              
CGGAGGCGCTGCTCCTCGCACTAGCGTCGTCGGTCGTGTCTTCACTGCTAATGAATCTCCTCCTGATCAGAAGATTCCTTTTCACCACGAGATGGCTCAGgta---ttgatcaaaatcagatttgggtttatgtgaatttgattttttac-atctaaagttttgagctttattgaatttgattgatgg-tgtttgttag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351056398|gb|FQ454259.1|FQ454259
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCC-TCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|34547124|gb|CF515356.1|CF515356
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|34551064|gb|CF519262.1|CF519262
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGGAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|351047992|gb|FQ441164.1|FQ441164
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCC-TCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|351031694|gb|FQ459951.1|FQ459951
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCC-TCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110375915|gb|EC940945.1|EC940945
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|34547213|gb|CF515445.1|CF515445
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|352789732|gb|FQ478547.1|FQ478547
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110686256|gb|EE063694.1|EE063694
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCNTGAGTTCCCCTCCAAA-NNNNNNNCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|349814631|gb|FQ399271.1|FQ399271
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110363879|gb|EC927508.1|EC927508
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCGTGAGTTCCCCTCCAAATTGTTTCTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|161716405|gb|FC068409.1|FC068409
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110390279|gb|EC955181.1|EC955181
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|349833013|gb|FQ416391.1|FQ416391
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|30126325|gb|CB911664.1|CB911664
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|351019404|gb|FQ429539.1|FQ429539
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|349808849|gb|FQ406699.1|FQ406699
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|37184687|gb|CF604041.1|CF604041
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|351043769|gb|FQ431321.1|FQ431321
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110401242|gb|EC967845.1|EC967845
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|30135485|gb|CB920823.1|CB920823
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|71855491|gb|DT004546.1|DT004546
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|349818985|gb|FQ411680.1|FQ411680
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110396768|gb|EC962467.1|EC962467
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110421556|gb|EC987854.1|EC987854
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|349829847|gb|FQ422160.1|FQ422160
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|294966174|gb|GW839397.1|GW839397
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTATCTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110385809|gb|EC950365.1|EC950365
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110413219|gb|EC978998.1|EC978998
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110713963|gb|EE090343.1|EE090343
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
EST: gi|110401052|gb|EC967645.1|EC967645
EST:     ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAG                         GTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA
genomic: ATGAGTCACCGCCGGATCAGAAGATCCCCTTTCACCACGAAATGGCTCAGgtgcgtttta ... ttttctgcagGTTCCTGAGTTCCCCTCCAAATTGTTTTTCTTCTGTGAAGTAGAACCTGGA