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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATTTTCAAGGCCAATTACCCTCCTTATGGAAGGGACTTCATCAACCATCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagcttaaagcagtgatccaatgccattgagtttggtaccttatcaaatttatgtactaatcatgattgtaatcccatttacag

Basic information

species Vitis vinifera
transcript Vv09s0002g03140.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G42960.1 (Glycine max), 5'ss of exon 1
ACCATTTTCAAGGCCAATTACCCTCCTTATGGAAGGGACTTCATCAACCATCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgt-----aatcagcttaaagcagtgatccaat-gccat---tgagtttggtac-cttatcaaatttatgtactaatcatgattgtaatcccatttacag
||| |||||||||| || ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||| || || |||||||||     |||    | |||   |  |   | |   |||   |     | || | | |||   ||||   | ||  |    ||  |  | || ||| |||
ACCCTTTTCAAGGCTAACTACCCTCCTTATGGAAGGGACTTTATCAACCATCAACCCACTGGGAGGTTCTGCAATGGGAAACTAGCTACTGATATTACTGgtgaggaaatatcatcaaaattgcaacttacttagcatggatagaaatagtgcacatatattattttcattcttgttgaaataatgtttccttttgcag

upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G02430.1 (Glycine max), 5'ss of exon 1
ACCATTTTCAAGGCCAATTACCCTCCTTATGGAAGGGACTTCATCAACCATCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagcttaaagcagtgatccaatgccattgagtttggtaccttatcaaatttatgtactaat-----catgattgtaatcccatttacag------------------
||| |||||||||| || ||||||||||||||||||||||| | ||||||||| || || ||||||||||||||||| |||||||| || || ||||||||| |  |  | | | ||  | |   |    ||| || ||||      ||       || || | ||      || ||| | || |   ||  |                   
ACCCTTTTCAAGGCTAACTACCCTCCTTATGGAAGGGACTTTAGCAACCATCAACCCACTGGGAGGTTCTGCAATGGGAAACTAGCTACCGATATTACTGgtgaggaaataacatcaa-gcttggaacttatttagcttggagagaaatagtgcacatatattcatatatatataattttcattcttgttgaaatgatgtttccttttgtag

upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G21340.1 (Glycine max), 5'ss of exon 1
ACCATTTTCAAGGCCAATTACCCTCCTTATGGAAGGGACTTCATCAACCATCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaa--tcagcttaaagcagtg---atccaat-----gccattgagtttggtaccttatcaaatttatgta--ctaatcatgattgtaatcccatttacag
||| ||||||||||  |||||||||||||||| ||||||||  | ||||| || ||||| |||||||| |||||||| ||| |||| || ||  | ||||||||    | |||||| ||      ||||||       | ||| || || |      ||  | | ||||||   || |  | |  ||| ||   || |  |
ACCCTTTTCAAGGCTGATTACCCTCCTTATGGGAGGGACTTTGTTAACCACCAACCTACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATTTCACTGgtaagacaaacttaaaccatcaaatatccaacctgtgactatttagattagatgacaatggagtatatgtatattatttgtcaaagtagtct-gttgattg

upper sequence: Vv09s0002g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G01680.1 (Glycine max), 5'ss of exon 1
ACCATTTTCAAGGCCAATTACCCTCCTTATGGAAGGGACTTCATCAACCATCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaa--tcagcttaaagcagtgatccaatgccattgagtttggtaccttatcaaatttatgtactaatcatgattgtaatcccatttacag------------
||| ||||||||||  |||||||||||||||| ||||||||    ||||| || ||||| |||||||| |||||||| ||| |||| || ||  ||||||||||  | |  ||||   |   ||| |||   || ||  ||| |||||  | | ||| |  ||  ||| ||   |||| |     ||  |             
ACCCTTTTCAAGGCTGATTACCCTCCTTATGGGAGGGACTTTGCTAACCACCAACCTACTGGGAGGTTTTGCAATGGCAAATTAGCTACTGATTTTACTGgtaagataaagttaattaaaccatcaaattatatagaacttg-tacctacttagatt-agatatgaat-atatatgtattttttgttgtataacggtagtaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110708453|gb|EE086014.1|EE086014
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|87584379|gb|DY473580.1|DY473580
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110690654|gb|EE068002.1|EE068002
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|77578102|gb|DV217820.1|DV217820
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110699841|gb|EE077205.1|EE077205
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|30297185|gb|CB973979.1|CB973979
EST:     TAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|351026188|gb|FQ428200.1|FQ428200
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|351036838|gb|FQ459360.1|FQ459360
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110699441|gb|EE076440.1|EE076440
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|349820296|gb|FQ403912.1|FQ403912
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110693430|gb|EE069653.1|EE069653
EST:     AAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: AAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110688538|gb|EE067202.1|EE067202
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|352786676|gb|FQ479883.1|FQ479883
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|30252385|gb|CB969936.1|CB969936
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|33405107|gb|CF210734.1|CF210734
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|351032432|gb|FQ458797.1|FQ458797
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|71877396|gb|DT026451.1|DT026451
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|294966492|gb|GW837627.1|GW837627
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|351030663|gb|FQ438501.1|FQ438501
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110697427|gb|EE074406.1|EE074406
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
EST: gi|110707568|gb|EE084113.1|EE084113
EST:     TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTG                         CTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG
genomic: TCAGCCTACAGGGAGGTTCTGCAATGGAAAACTAGCCACAGACATTACTGgtaatcagct ... ccatttacagCTGACACTCTTGGCTTCAAGACTTACCCCCCAGCATACCTTAGCCCCAAGG