Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACTGAAGCTCTCTGTAAGgtctgtgtcttcgttttctcttttgcattttcgtgttcattttcttcttgatgatattttattaaattttatttctatattccgtttggttgccgagaaa...

Basic information

species Vitis vinifera
transcript Vv09s0002g02480.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33408295|gb|CF213922.1|CF213922
EST:     GATCACTGAAGCTCTCTGTAAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: GATCACTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|34415800|gb|CF414554.1|CF414554
EST:     CTGAAGCTCTCTGTGAG                         GTTTAGTTAAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: CTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|33408207|gb|CF213834.1|CF213834
EST:     GATCACTGAAGCTCTCTGTAAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: GATCACTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|110371455|gb|EC935494.1|EC935494
EST:     CTGAAGCTCTCTGTGAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: CTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|71875604|gb|DT024659.1|DT024659
EST:     GAAGCTCTCTGTGAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: GAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|110418586|gb|EC984746.1|EC984746
EST:     CTGAAGCTCTCTGTAAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: CTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
EST: gi|30304091|gb|CB980885.1|CB980885
EST:     GATCACTGAAGCTCTCCGTAAG                         GTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG
genomic: GATCACTGAAGCTCTCTGTAAGgtctgtgtct ... gcactgccagGTTTAGTTTAAGCAGTCATGGCATCAAAGTTAGTTCAGTTGCAAACAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCACTGAAGCTCTCTGTAAGgtctgtgtcttcgttttctcttttgcattttcgtgttcattttcttcttgatgatattttattaaattttatttctatattccgtttggttgccgagaaa

- -  CTGAAG
- - - TGAAGC