Sequence
atgc intronic sequence ATGC exonic sequenceGCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgtttttggaatggtttgttttgagtgtttttgtttttggtcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g01600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G07970.1 (Glycine max), 5'ss of exon 1
GCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgtt---ttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgtttttggaatggtttgttttgagtgtttttgtttttggtcttgcag
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GCAATGGACAGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGGCTGGCATGATCAAAGCCCTCACCACTGgttactctctctttctctctaaattttcttctttctttttcttttttttttaaattctactcactaaagtttattt---atttataattttttttttttgcag
upper sequence: Vv09s0002g01600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G05940.2 (Glycine max), 5'ss of exon 1
GCCATGGACGGAGGCGCA---AACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttcttttgttttttattttttaatttgagtttgaatt--tgaatttgaatttgtttttggaatggtttgttttgagtgtttttgtttttggtcttgcag---------------------------
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---ATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGgtctctctctctctctctctcactcgcttttgttcttaccaattaatttcagtgtttcctctgcaaaattacctgttcctgtttttaatac-attctaatactcaactttccttttcctttcttctcag
upper sequence: Vv09s0002g01600.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G16740.1 (Glycine max), 5'ss of exon 1
GCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgttt---ttggaatggtttgttttgagtgtttttgtttttggtcttgcag---------------------------------------------------------------
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GTGATGGACGGTGGAGTGAACTACAACCCTCGCACTGTGGAAGAGGTTTTCCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGgtctctatctcactcttctctttttcttcttacaaacactcctact-gagtgtgtctcactcgcttttgttcttgccaattaattttagcgcctcctctgcaaaaattacctgttcctgtttttaatacattctaatatccaactttccttttcctttcttcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374261|gb|EC938930.1|EC938930EST: AGAGA-TTCAAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAG ATGTGGACGAATTTTATCAGCAGTGTGATCCCG
genomic: AGAGATTTC-AAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttctttt ... ggtcttgcagATGTGGACGAATTTTATCAGCAGTGTGATCCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgtttttggaatggtttgttttgagtgtttttgtttttggtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT