Sequence
atgc intronic sequence ATGC exonic sequenceCTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgttactttctttcttcgtatatatatatatttgttttttctgatatgcatatatatgttgcgatttttttttttttggtggggtttcgttggtttgggtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G07420.1 (Glycine max), 5'ss of exon 2
CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgt------tactttctttcttcgtatatatatatatttgttttttctgatatgcatatatatgttgcgattttt-----ttttttttggtggggtttcgttggtttgggtt---------------------------------------------
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GAGGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCGGAAGTTGTCACCAAGTACAAGAGCGCCGCGGAGATTGTTAACAgtgtgttacactctcattttttgttaaattcttaatgggtttttggtttttggtacattgggttcattactttgatgggttattgttaatgggttatttgcgtttttatttttcttatgttgatgagttatgttttgttttgttttaattaaacag
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 2
CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgt-tactttctttcttcgtatat-atatatatttgttttttctgatatgcatatatatgttgcgatt-------tttttttttttggtggggtttcgttgg---tttgggtt------------------------------------------------------------------------
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GACGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAATTGGATCTCACTTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttcactctctcatttctcattttttttggttaaattctaaaagggtttttgtttttggatacattgggtttattactttgatgggttatcgttaaagctttctgttttactttgatgggttatttgcgtttttatttttcttatgttgatgagtaaggttttgtttttaattaaacag
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G43390.1 (Glycine max), 5'ss of exon 2
-CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgt--------tactttctttcttcgtatatatatatattt--gttttttctga--tatgcatat---atatgttg----cgattttttttt----ttttggtggggtt----tcgttggtttgggtt----------------------------------------------------------------
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TTGTGCCACCATGTCGGACGATGAAAGGGAGGAGAAAGAGTTGGATCTCTCTTCTGCCGAAGTTGTCACCAAATACAAAACCGCTGCTGAGATCGTTAACagtgtgttcctcactctcttactcttaatatttgtggtctcaaattttatctgggttttggttattttatacattggacacaatttttttctggaaccttgctggagttcactttttttttttaaatttacattttttgttttgctaagattgcactggatttttttttctgtgtttgtctatgattttaca
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 2
CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgttactttctt--tcttcgtatatatatata---------tttgttt---tttctgatatg-catatatatgttgcgattttttttt---ttttggtggggtttcgttggtttgggtt---------------------------------------------------------------
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TGTACCACCATGTCGGACGATGAAAGGGAGGAGAAGGAGTTGGATCTCTCTTCTGCAGAAGTTGTAACCAAATACAAAACCGCGGCTGAGATCGTTAACAgtttgttcctcactcttttaatgcctttgtggtctcaaattctatttgggttttggttatttcatacattggacacaatttttcctggaaccttgctgaagtt-catttttttaaatttatattttttggttcaactaagatttgatgttttttttcttgtgtttatctatgattttacag
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 1
CTCGAAACGATGTCGGATGACGAAA---GAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgt---tactttctttcttcgtatatatatatatttgttttttctgatatgcatatatatgttgcgatttttttttttttggtggggtttcgttggtttgggtt
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---GTCGCCATGTCGGACGACGAGATGAAGGAGGAGAAGGAGCTCGATCTGACTTCTCCCGATGTGGTCACCAAGTACAAATGCGCCGCTGAGGTTGCCAACAgtaagtacccgcgctgctgattttgctgcagagtttggattactttagggtttaagggaattg-gagttttggagttgtggtgat-tcgtgttcactggcat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71875961|gb|DT025016.1|DT025016EST: TTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACA AGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTG
genomic: TTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgttactttct ... atttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgttactttctttcttcgtatatatatatatttgttttttctgatatgcatatatatgttgcgatttttttttttttggtggggtttcgttggtttgggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg