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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCTCTCATTCCTCTCCGTCGCCGTCTTCAACCTCTCTCTGgtagatgttcaacacgttttcttttctttgctttgcttttttttcttttttcttttttattattcgttgtttgcttatttactgttttttctcggcaacc...

Basic information

species Vitis vinifera
transcript Vv08s0058g01440.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724528|gb|EE100436.1|EE100436
EST:     CATTCCTCTCCGTCGCCGTCTTCAACCTCTCTCT-                         --GATTTGACAACTTAATCTTCATGAGTTCAAAAACCACTGTAGCATCTGT
genomic: CATTCCTCTCCGTCGCCGTCTTCAACCTCTCTCTGgtagatgttc ... ccttgggctaCAGATTTGACAACTTAATCTTCATGAGTTCAAAAACCACTGTAGCATCCGT
EST: gi|352769651|gb|FQ468579.1|FQ468579
EST:     AACGCTCTCATTCCTCTCCGTCGCCGTCTTCAACCTCTCTCT-                         --GATTTGACAACTTAATCTTCATGAGTTCAAAAACCACTGTAGCATCCGT
genomic: AACGCTCTCATTCCTCTCCGTCGCCGTCTTCAACCTCTCTCTGgtagatgttc ... ccttgggctaCAGATTTGACAACTTAATCTTCATGAGTTCAAAAACCACTGTAGCATCCGT