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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttattattaaccatttcatgcttattttctggattatcgctttcttttaacttatagc...

Basic information

species Vitis vinifera
transcript Vv08s0058g00970.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G44320.1 (Glycine max), 5'ss of exon 1
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttattattaaccatttcatgcttattttctggattatcgctttctttta-acttatagc------
    |||| ||| ||    | |||| || | || |||| |||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||| | |||||||| |||   ||    || || | | | |   || ||||||||||    |||||||| |     |    ||   |||   |    |  |  ||         
----TCAACCATTAAGAGCGTAGTGGACTCTGCTGTGAGCAATGAGGCTCGCATGGGAGCATCCCTCCTACGTCTCCATTTCCATGATTGCTTTGTTCAAGCAAgtcaacttaccctttcatcaatcttcttca---agtttttattatttcaaatttcatgttccccatgcatatacgcgcgcacacgcatgcacatgcatgttta

upper sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G41450.1 (Glycine max), 5'ss of exon 1
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttact-catctccatgtccatgagctagcttttattatta-accatttcatgcttattttctggattatcgctttcttttaacttatagc
 ||||||| ||| ||||| | |||     | || |||||||| |||  ||||||||| || ||| |||||||||||||||||||||||||||||||| | |||||||| |||| |||    | |  | |  || |       |||| | ||    ||    | | ||||  |        |  | |  | |  |  ||||  
ACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGCATGGGAGCCTCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAAgcaagtcaactttcactatgcccctttttttattattatttatttactctttcggcaccataagtttatgcttgaaggcttaacctaatatatatgtata--

upper sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G41440.1 (Glycine max), 5'ss of exon 1
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttattattaaccatttcatgcttatttt----ctggattatcgctttctttta-acttatagc---
 ||||||| ||| ||   ||||||| |  | || |||| |||||||||||||||||| || ||||| || |||||||||||||||||||| |||||| | |||||||| |||  || || || |||       |     |||| |||| |    |||||||| | ||  |    ||| |    | | | | |  |   ||||  |   
GCTTTCAACCATTAAGAGTGCAGTGGATTCTGCTGTGAGCAATGAGGCTCGCATGGGGGCTTCCCTCCTACGTCTTCATTTCCATGATTGTTTTGTTCAAgcaagtcaactt--acccagcttcatc------aatcttctttcattacttcaaatttcatgttcatcgtgcatctgcacacacacatgcatacatgtttatcacgaa

upper sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G04880.1 (Glycine max), 5'ss of exon 1
CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttactcatctccatgtccatgagctagcttttat-tattaaccatttcatgcttattttctggattatcgctttcttttaacttatagc
||| |  | ||| ||      ||| | | | || |||   || ||| |||||||||| |||||| |||||||||||||||||||||||||||||||  | | |||||||   ||| || | |   | |  ||         | ||| |||  |    |  ||   ||| |       |||   ||| ||||   ||  |  
CCTCTTTACCATTAATAACCTAGTAACCGCTGCTGTGCGGAAAGAGTCTCGCATGGGTGCATCCTTGCTCCGTCTTCATTTCCATGATTGCTTTGTCCAAgtaagtcattaattaatcttattgttatatatatatatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttgaat-

upper sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G44310.1 (Glycine max), 5'ss of exon 1
-CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttact-catctccatgtccatga-gctagcttttattattaaccatttcatgcttattttctggattatcgctttcttttaacttatagc
  ||||||| ||| ||||| | |||     | || |||||||| |||  ||| ||||| || ||  |||||||||||||||||||||||||||||||| | |||||||| |||| |||   || |  | | ||| | | |   |||| |  ||    |    | | ||||  |        |  | |  | |  |  |||   
CACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAagcaagtcaactttcactatgtcccttttttcattatgatttattttctctttcggtaccataagattatgcttgaaggcttaacctaatatatatgtat---