1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTTTTGCAGATGGGTCCTCATAAAAGTCGCCCCCTTCGAAGATTTCAGGTGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagcactctcttctcctccctcttccaacttttctcatttatatatatttgtatttatattttcagtgttcttcgacacttccattttaagtatg...
species | Vitis vinifera |
transcript | Vv08s0056g01690.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGC GTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATGEST: gi|30325643|gb|CD008905.1|CD008905
genomic: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagca ... tgtttttcagGTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATG
EST: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGC GTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATGEST: gi|32270950|gb|CD720109.1|CD720109
genomic: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagca ... tgtttttcagGTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATG
EST: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGC GTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATGEST: gi|30324300|gb|CD007562.1|CD007562
genomic: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagca ... tgtttttcagGTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATG
EST: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGC GTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATG
genomic: TGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagca ... tgtttttcagGTCTTTGGAGTGTTGCATTTAGTGGTTTCTCTTGGGATAATACTAGCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTGCAGATGGGTCCTCATAAAAGTCGCCCCCTTCGAAGATTTCAGGTGAAATCCATGGGGACTGATAGTGGGAGCACTCCCTTGGGCCTCCAAAGCgtgtgtagcactctcttctcctccctcttccaacttttctcatttatatatatttgtatttatattttcagtgttcttcgacacttccattttaagtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctccc