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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGAACAAACGCTTGGTCGACTGCTTTCTTCTCTTTCATGGCTTCTTCTACTATTTCCTCCAACTCTACTACTTTCATCAAGgttaatgtcttcctaaatctctttttttcccaaattttctcagcaaaatctcactaacccattttgtttttgtttttgttttttttttttttcgccag

Basic information

species Vitis vinifera
transcript Vv08s0056g01640.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294964435|gb|GW838238.1|GW838238
EST:     CTTTCATGGCTTCTTCTACTATTTCCTCCAACTCTACTACTTTCATCAAG                         AAAGATGTGGGTCTCTCTGCATTTTCATCATCGCCATCATCATTTTCCGTC
genomic: CTTTCATGGCTTCTTCTACTATTTCCTCCAACTCTACTACTTTCATCAAGgttaatgtct ... ttttcgccagAAAGATGTGGGTCTCTCTGCATTTTCATCATCGCCATCATCATTTTCCGTC
EST: gi|161719979|gb|FC068309.1|FC068309
EST:     GGCTTCTTCTACTATTTCCTCCAACTCTACTACTTTCATCAAG                         AAAGATGTGGGTCTCTCTGCATTTTCATCATCGCCATCATCATTTTCCGTC
genomic: GGCTTCTTCTACTATTTCCTCCAACTCTACTACTTTCATCAAGgttaatgtct ... ttttcgccagAAAGATGTGGGTCTCTCTGCATTTTCATCATCGCCATCATCATTTTCCGTC