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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATTCTCAATCTCAGCCCCTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttctccacattaaacccttctttgtgggtcttcatccaccttactactataagcctttatgtttgagttgttttggtgtgagagatatagtgtg...

Basic information

species Vitis vinifera
transcript Vv08s0056g01570.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863543|gb|DT012598.1|DT012598
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAG                         C-G--CAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|161708807|gb|FC060892.1|FC060892
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71863484|gb|DT012539.1|DT012539
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71862555|gb|DT011610.1|DT011610
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|352768554|gb|FQ467510.1|FQ467510
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71863867|gb|DT012922.1|DT012922
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|352773395|gb|FQ472177.1|FQ472177
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|33408747|gb|CF214374.1|CF214374
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71858630|gb|DT007685.1|DT007685
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71861010|gb|DT010065.1|DT010065
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|37190486|gb|CF609835.1|CF609835
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|352794891|gb|FQ477001.1|FQ477001
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71865224|gb|DT014279.1|DT014279
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|33410520|gb|CF216147.1|CF216147
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|33410263|gb|CF215890.1|CF215890
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|110702737|gb|EE078971.1|EE078971
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|161714928|gb|FC062706.1|FC062706
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTT-GATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|161716722|gb|FC069156.1|FC069156
EST:     TTCTCCATCTTCC-CTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: TTCTCCATC--CCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|161715510|gb|FC069060.1|FC069060
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71861007|gb|DT010062.1|DT010062
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|110687789|gb|EE065597.1|EE065597
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|33406771|gb|CF212398.1|CF212398
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71861492|gb|DT010547.1|DT010547
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71855845|gb|DT004900.1|DT004900
EST:     CTTTCTCCATCCCACTGGTGCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|110688260|gb|EE066612.1|EE066612
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71858737|gb|DT007792.1|DT007792
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71860329|gb|DT009384.1|DT009384
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAG                         C-G--CAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|161708008|gb|FC056988.1|FC056988
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71855557|gb|DT004612.1|DT004612
EST:     CTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|71863574|gb|DT012629.1|DT012629
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAG                         C-G--CAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
EST: gi|33409880|gb|CF215507.1|CF215507
EST:     CTTTCTCCATCCCACTGGTTCCAATTTCTGATCGCTTCTATCTCCTTT--                         -AGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG
genomic: CTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttct ... tgtgatgaaaCAGCACAATGGCGTCCCACATTGTTGGATATCCTCGCATGGGGCCCAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCATTCTCAATCTCAGCCCCTTTCTCCATCCCACTGGTTCCAATTTCTCACCGCTTCTATCTCCTTTAGgtacgcttctccacattaaacccttctttgtgggtcttcatccaccttactactataagcctttatgtttgagttgttttggtgtgagagatatagtgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagata