1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TATCAGAGATACGATATTCAGCAGGCTGCCAGGTGGATTGAGCAGGTGCTTCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattccttatttatttcaatgtagcagtagtttttagcatctataaatttgtgctatgcgaaagcaacaactagttatggttctttgattttgaca...
species | Vitis vinifera |
transcript | Vv08s0056g00440.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|30253236|gb|CB970787.1|CB970787
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|110729839|gb|EE106235.1|EE106235
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|161705757|gb|FC056628.1|FC056628
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|161708174|gb|FC056515.1|FC056515
genomic: TTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|110390287|gb|EC955189.1|EC955189
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|30253079|gb|CB970630.1|CB970630
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAAEST: gi|161719084|gb|FC069337.1|FC069337
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
EST: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAG GATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
genomic: TCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattcc ... gcacttgcagGATTCTTTGTTACTATTTGGATATCCGCTGTAATGTTCAAGTCCAATGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATCAGAGATACGATATTCAGCAGGCTGCCAGGTGGATTGAGCAGGTGCTTCCTTTCACTTTGCTGCTGTTGGTGGTTTTCATCCGGCAACATTTGCAAGgtattattccttatttatttcaatgtagcagtagtttttagcatctataaatttgtgctatgcgaaagcaacaactagttatggttctttgattttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa