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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGCATGGCACACATGACTATCATCAGGAGACATTGGACAATCTCAGGATTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattctgcgcctctcaatagtatttgttgttaaactctaattaaatatgcttacttgcatatgctgtcttgcagttaaactaatttttgaaagaa...

Basic information

species Vitis vinifera
transcript Vv08s0056g00190.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712102|gb|FC061474.1|FC061474
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|110698076|gb|EE075678.1|EE075678
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|71863653|gb|DT012708.1|DT012708
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|161707202|gb|FC056407.1|FC056407
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|110686726|gb|EE064694.1|EE064694
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|161718515|gb|FC069292.1|FC069292
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|161720977|gb|FC070692.1|FC070692
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|110709558|gb|EE085123.1|EE085123
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|110726242|gb|EE101850.1|EE101850
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
EST: gi|71863537|gb|DT012592.1|DT012592
EST:     TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAG                         GGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT
genomic: TTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattc ... gttgctgcagGGACCTGAGATTCGAACTGGTTTTCTAAAGGATGCAAAGCCTATCCAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCGCATGGCACACATGACTATCATCAGGAGACATTGGACAATCTCAGGATTGCTATGCAGAACACTCAGATCCTCTGCGCTGTGATGCTTGATACCAAGgtcactattctgcgcctctcaatagtatttgttgttaaactctaattaaatatgcttacttgcatatgctgtcttgcagttaaactaatttttgaaagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaga