1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTACTGGGAGGCCAGGCCCCAGTGGCTTTGGATCCGCTTCCACTGCTGAACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTGgtcagctctgcctttccttttccatgggctttgttttcttctcacaaagtgcacgatctcttggactgtttggtcaatgttgtgcgtgtaattatatgat...
species | Vitis vinifera |
transcript | Vv08s0040g03400.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTG GAGGTGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGAEST: gi|71872854|gb|DT021909.1|DT021909
genomic: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTGgtcagctctg ... gttgttgtagGAGGAGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGA
EST: GATCGTCACTG GAGGTGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGAEST: gi|71869703|gb|DT018758.1|DT018758
genomic: GATCGTCACTGgtcagctctg ... gttgttgtagGAGGAGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGA
EST: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTG GAGGTGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGAEST: gi|71872056|gb|DT021111.1|DT021111
genomic: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTGgtcagctctg ... gttgttgtagGAGGAGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGA
EST: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTG GAGGTGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGA
genomic: ACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTGgtcagctctg ... gttgttgtagGAGGAGCAAGTGGGATCGGTTTTGAGACAGCAAGGGTCTTGGCTCTGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTACTGGGAGGCCAGGCCCCAGTGGCTTTGGATCCGCTTCCACTGCTGAACAAGTTACAGAAGGAGTTGATGCCAGCAACCTCACTGCGATCGTCACTGgtcagctctgcctttccttttccatgggctttgttttcttctcacaaagtgcacgatctcttggactgtttggtcaatgttgtgcgtgtaattatatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc