1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATCTCGGCTTTTCCCTCTCCTTCAGACCCTGCAACGAAAGCATCGAACTCTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcctgactcttcctttattttgttgcgataaaaaatgcccaagaaaaaaaaaagagagaattttgaattactgttatttgttgttttccttttt...
species | Vitis vinifera |
transcript | Vv08s0040g03130.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTTCATCGAGAAGTGTCGTCACAGCCTCCGCCGCTTCCGGTTCTCCTG GAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAGEST: gi|26263854|gb|CA814917.1|CA814917
genomic: CTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcct ... atgtaaccagGAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAG
EST: CTCTTCATCGAGAAGTGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTG GAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAGEST: gi|110374235|gb|EC938881.1|EC938881
genomic: CTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcct ... atgtaaccagGAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAG
EST: CTCTTCATCGAGAAGTGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTG GAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAGEST: gi|110731056|gb|EE108844.1|EE108844
genomic: CTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcct ... atgtaaccagGAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAG
EST: CTCTTCATCGAGAAGTGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTG GAATTGAATCTTCCACTGTTAGTGATGATTCCACGAACTTATTGGATAGAGEST: gi|351021722|gb|FQ437107.1|FQ437107
genomic: CTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcct ... atgtaaccagGAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAG
EST: CTCTTCATCGAGAAGTGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTG GAATTGAATCTTCCACTGTTAGTGATGATTCCACGAACTTATTGGATAGAG
genomic: CTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcct ... atgtaaccagGAATTGAATCTTCCACTGTTAGTGATGATACCACGAACTTATTGGATAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTCGGCTTTTCCCTCTCCTTCAGACCCTGCAACGAAAGCATCGAACTCTCTTCATCGAGAAGAGTCATCACAGCCTCCGCCGCCTCCGGTTCTCCTGgcaagttcctgactcttcctttattttgttgcgataaaaaatgcccaagaaaaaaaaaagagagaattttgaattactgttatttgttgttttccttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagagaa