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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTATACATATTAGATTGTAGCATACCTAGCTAACTAGTATTAGATCATCATCGTCATCACCGGTCATGGGTGAATCTTCCGCTTCATATATCCACATGgtgagcatacctctctcttattccagatcttttcatataactggcctgggttttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcag

Basic information

species Vitis vinifera
transcript Vv08s0040g02650.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22012300|gb|BQ797334.1|BQ797334
EST:     CATCGTCATCACCGGTCATGGGTGAATCTTCCGCTTCATATATCCACATG                         GTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
genomic: CATCGTCATCACCGGTCATGGGTGAATCTTCCGCTTCATATATCCACATGgtgagcatac ... ttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
EST: gi|110422937|gb|EC989271.1|EC989271
EST:     GGGTGAATCTTCCGCTTCATATATCCACATG                         GTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
genomic: GGGTGAATCTTCCGCTTCATATATCCACATGgtgagcatac ... ttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA