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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTAGGGTTTGTAGTCGCATCAGCTTTCGCTAGGGTTTCTCTGCTCTGATTTTTGGTCCCGAAAATGGCTGGCAAAACTGTGGTCTCGGACGATGAAGgtgagagccctagaatcttgaatttcgtgcattttcctgatttttgattgcgttttcacattttttgctgttttctttcaatttttgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g00610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110402312|gb|EC959835.1|EC959835
EST:     AATGGCTGGCAAAACTGTGGTCTCGGACGATGAAG                         AGGATGTTGAGGTTGAAGATAATGAGGGAGAGCCCCTTGACGAAGAAGACC
genomic: AATGGCTGGCAAAACTGTGGTCTCGGACGATGAAGgtgagagccc ... atttttgcagAGGATGTTGAGGTTGAAGATAATGAGGGAGAGCCCCTTGACGAAGAAGACC
EST: gi|110401024|gb|EC967616.1|EC967616
EST:     ATTTTTGGTCCCGAAAATGGCTGGCAAAACTGTGGTCTCGGACGATGAAG                         AGGATGTTGAGGTTGAAGATAATGAGGGAGAGCCCCTTGACGAAGAAGACC
genomic: ATTTTTGGTCCCGAAAATGGCTGGCAAAACTGTGGTCTCGGACGATGAAGgtgagagccc ... atttttgcagAGGATGTTGAGGTTGAAGATAATGAGGGAGAGCCCCTTGACGAAGAAGACC