1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt...
species | Vitis vinifera |
transcript | Vv08s0040g00520.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|351023659|gb|FQ448210.1|FQ448210
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110386951|gb|EC951586.1|EC951586
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110360649|gb|EC923923.1|EC923923
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|351019024|gb|FQ426523.1|FQ426523
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGCCATCTAGTACCTGAACTAGGGAAEST: gi|110387277|gb|EC951932.1|EC951932
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|30135520|gb|CB920858.1|CB920858
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|33403630|gb|CF209257.1|CF209257
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|351055716|gb|FQ452181.1|FQ452181
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110370437|gb|EC929699.1|EC929699
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|28965488|gb|CB344521.1|CB344521
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110428332|gb|EC994801.1|EC994801
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|33404930|gb|CF210557.1|CF210557
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|254917926|gb|GR903578.1|GR903578
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|351052434|gb|FQ452467.1|FQ452467
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110383625|gb|EC948008.1|EC948008
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|161713713|gb|FC063744.1|FC063744
genomic: TAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110728240|gb|EE103634.1|EE103634
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110726662|gb|EE102641.1|EE102641
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|161719503|gb|FC066427.1|FC066427
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|71871773|gb|DT020828.1|DT020828
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGEST: gi|46917630|gb|CN546959.1|CN546959
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGG
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|294966556|gb|GW837691.1|GW837691
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110727502|gb|EE104333.1|EE104333
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: CCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|30126168|gb|CB911507.1|CB911507
genomic: CCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: CACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|161716902|gb|FC068124.1|FC068124
genomic: CACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|351043498|gb|FQ428970.1|FQ428970
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110427331|gb|EC993766.1|EC993766
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|71880620|gb|DT029675.1|DT029675
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|71879674|gb|DT028729.1|DT028729
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|71879299|gb|DT028354.1|DT028354
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAAEST: gi|110372251|gb|EC936404.1|EC936404
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc