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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt...

Basic information

species Vitis vinifera
transcript Vv08s0040g00520.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g17250.1 (Oryza sativa), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgt--attctctatctttctgctactctcttagtttt-cgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt
| || ||      |||||||||||||||||| |||| |||||||||||| || |||||||||||| |||||||  | |  | |||||||||||| ||  |||  ||  |    |   |   |  |  |   |   |  |  |     |  |  | ||     |     | | |     |   || | || |  |||       
CGGACCCCCGGGGCGTGCTCCAGAGCTGGGACCCGACCCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGCCGGCCGCGTCACCCGCCTgtgagtccacctcccccccccccaccgccgccgccgcctcgccgactgagctggctactaccggccggttttgctccctccgttgtgtactgcttttgtt---

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcga-gtttttatttatatattt-atttctccctt
  || || | |   ||||| ||||||||||| || |  ||||||||||| || |||||||||||| |||||||  | |  |||  ||||||||| ||  |||  |    | || ||  ||     ||||| | |   | |    || |   |    |||| |  |  | |    ||||   | | |     |  |    |  
GGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgacc-ctctccctccctccctctcctcgcgct-gcgctgtactgtacgcgtaggctcgagttgggtacttttgggtgtttgggggaactggatcgc

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM5G815009_T01 (Zea mays), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactc-tcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt
  || || | |  |||||| ||||||||||| || |  ||||||||||| || |||||||||||| |||||||  | |  |||  ||||||||| ||  |||  |      |   |   ||    ||| || | | |  |   |    ||||       |    | ||   | |   |            | |||    | 
GGGACCCCGGCGGCGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgctgcctcccaactctccctcgtcctcgctcccccctttcccctgcggccc-gcccccttcaataatcccttgacggggggaaacttcagtatg

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt-
  || || | |  ||| || ||||||||||| || |  ||||||||||| || |||||||||||| |||||||  | |  |||  ||||||||| ||  |||  |   || |   || ||  || ||| ||   | |  |   | || |            ||    ||| |       |    | |  ||      | | 
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaact-ctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G04520.1 (Glycine max), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt-
| || || |||||||| ||||||||||||||||| |  ||||| | ||| ||||| ||||||||| ||||||| || ||||||  ||| |||||||| ||||||| || | || ||| | ||    | | |  || || ||| | ||| | ||   ||   |   |  |   | |||||||||||   |  |      || 
CGGACCCTGACAACGTTCTCCAGAGCTGGGATCCCACTCTCGTTAGCCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGCGTgtatgcatcccctctctctgtgtgtgtgtgtgtgtgtt-gttgctttcttaattgttactatctgttacttttatttatttatattactgctatcagtttt

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttc---atctcgagtttttatttatata-tttatttctccctt
| || || |||||||| ||||||||||||||||| |  ||||| |  || ||||| ||||||||| ||||||| || ||||||  ||| |||||||||||||||| || |||| ||| |||    ||||||  |||||   ||| || |||  ||  || ||||   ||    | | | | ||  | || ||||||| | |   
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttg--ttcctttctgtgatgcagctttcctaattgttactgtctgttactttaatttatttatact--

upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G21090.1 (Arabidopsis thaliana), 5'ss of exon 1
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttt--tcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt
| ||||| ||| | || ||||||||||||||||| |  || || || |||||||||||||||||  |||||||||| || |||  |||||||||||| ||||| |       | ||| |   || || | ||       | | ||||      || | | |   |  | | ||  |    | |  |  |||   |||   | 
CAGATCCAGACCATGTCCTCCAGAGCTGGGATCCAACTCTTGTTAATCCTTGTACCTGGTTCCATGTCACCTGTAACCAAGACAACCGCGTCACTCGTGTgtaagatcctcttttctcttatctcctgttttgaacaagttgattcgccaagaatctgtggagattctattga--tacagtctgaaatttttgctctattta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351028345|gb|FQ427241.1|FQ427241
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|351023659|gb|FQ448210.1|FQ448210
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110386951|gb|EC951586.1|EC951586
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110360649|gb|EC923923.1|EC923923
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|351019024|gb|FQ426523.1|FQ426523
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGCCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110387277|gb|EC951932.1|EC951932
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|30135520|gb|CB920858.1|CB920858
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|33403630|gb|CF209257.1|CF209257
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|351055716|gb|FQ452181.1|FQ452181
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110370437|gb|EC929699.1|EC929699
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|28965488|gb|CB344521.1|CB344521
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110428332|gb|EC994801.1|EC994801
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|33404930|gb|CF210557.1|CF210557
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|254917926|gb|GR903578.1|GR903578
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|351052434|gb|FQ452467.1|FQ452467
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110383625|gb|EC948008.1|EC948008
EST:     TAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|161713713|gb|FC063744.1|FC063744
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110728240|gb|EE103634.1|EE103634
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110726662|gb|EE102641.1|EE102641
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|161719503|gb|FC066427.1|FC066427
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|71871773|gb|DT020828.1|DT020828
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGG
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGG
EST: gi|46917630|gb|CN546959.1|CN546959
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|294966556|gb|GW837691.1|GW837691
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110727502|gb|EE104333.1|EE104333
EST:     CCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: CCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|30126168|gb|CB911507.1|CB911507
EST:     CACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: CACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|161716902|gb|FC068124.1|FC068124
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|351043498|gb|FQ428970.1|FQ428970
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110427331|gb|EC993766.1|EC993766
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|71880620|gb|DT029675.1|DT029675
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|71879674|gb|DT028729.1|DT028729
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|71879299|gb|DT028354.1|DT028354
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
EST: gi|110372251|gb|EC936404.1|EC936404
EST:     TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGT                         GGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA
genomic: TGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattc ... ctttttgcagGGACCTTGGTAGTTCAAACTTATCGGGTCATCTAGTACCTGAACTAGGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc