Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgctaagaaagggtgggagaaatgaacggaacctcaaaatt...

Basic information

species Vitis vinifera
transcript Vv08s0040g00410.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 2
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgtt-aattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgctaagaaagggtgggagaaatgaacggaacctcaaaatt
|||||||||| || ||||||||||| || || ||||| |||||||| ||||| ||||| |||||| | || || ||| | || |||||||| |||||||||||   ||   |  || | |||| |||  ||  ||||   |||        || | ||  ||| |  |     ||  |      ||       | | |   
GCAGCATAGGCACAGGATACGATCTGTCCGTTACCACCTTCTCTCCGGATGGTCGCGTCTTCCAGGTTGAGTATGCCACGAAGGCTGTCGACAACAGCGGgttcggtttaactgctcccctttctttccttccttttgctaccgcttcttcctttctgtgtgcaattatgtaatg--acgttctaatatttgttaacag--

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os05g41180.1 (Oryza sativa), 5'ss of exon 2
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttgg-ttgctaagaaagggtgggagaaatgaacggaacctcaaaatt
| |||||||| ||||| || ||||| || |||||||| ||||| || |||||||| || |||||| | || || || | ||| || ||||| |||||||||||   | |  |  ||| |  |    | | |||| ||   | |   |   |||||    ||  |    |||    |  |   |   | |            
GTAGCATAGGGACTGGTTATGATCTTTCCGTCACCACCTTCTCCCCAGATGGCCGTGTCTTCCAGGTTGAGTATGCTGGCAAGGCCGTCGACAACAGCGGgttcgattt--agtttcaccctcccctctgttttattacccttttttgggctgttcaactttatgctgaagttctgatgttttttgcag------------

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 2
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgctaagaaagggtgggagaaatgaacggaacctcaaaatt-
|||||||||| || || || ||||| ||||||||||| |||||||| ||||||||||| |||||| |||| || ||| | || |||||||| ||||||||||||  | ||||    |||    ||  | |||| ||||  | | | |  |      | || ||| |||       ||  ||   | || |  |   |||  
GCAGCATAGGCACAGGTTATGATCTGTCTGTCACCACCTTCTCTCCCGATGGCCGCGTCTTCCAGGTCGAGTATGCCACGAAGGCTGTCGACAACAGCGGgttagat-tccactgcctcccacttcctattttgttttg-cttgacttgttc-cccgttttctatgaatcttattgatgaagccatggtatttgtgaatag

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 2
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgtta-attct--------ccatcttctcttttttttttttttt---ttttaacctaaatcatctgtttggttgctaagaaa-------gggtgggagaaatgaacggaacctcaaaatt-
|||||||||| || || |||||||| ||||||||||| ||||| || ||||| || || |||||| ||||||| ||  |||| || ||||| |||||||||||| ||||         ||| || || || | |||||  ||      || || ||  || | |  |  ||| ||| | ||       || | ||  ||    | || |  |   ||   
GCAGCATAGGCACAGGTTACGATCTGTCTGTCACCACCTTCTCCCCAGATGGTCGTGTCTTCCAGGTCGAATATGCTACCAAGGCCGTCGACAACAGCGGgttagattccactgcctcccacctcctattgtgtttttgcttcaagccttcacttatttccttttctctgtt-ctatgtaatcttattggtttggttaatgccatggtatttgtgaacag

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 1
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatc--atctgtttggttgctaagaaagggtgggagaaatgaacggaacctcaaaatt---------------------------------------
||||||| ||||| || ||||||||||| |||||||| ||||| || |||||||| |||||||||||||| || || |||||||| |||||||||||||||||  | ||   | || | ||||  ||  |  ||||  ||   |||    |   ||||  |   |||  | |  |        |||        |     ||                                       
GCAGCATCGGAACAGGTTACGATCTCTCCGTCACCACTTTCTCCCCCGATGGCCGTGTTTTCCAGATCGAGTATGCTGCCAAAGCCGTCGATAACAGCGGgttggtactttttttttttttttaattcgtggttttgaaattgaaacggaaatagtttattgaataattatgatttttttttgtgattttgtatttttttttgtatttggtagtgatcctagatttgaaactttgttgtag

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 1
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgc--taagaaagggtgggagaaatgaacggaacctcaaaatt------------------------------------------------------------------------
| ||||| || || || |||||||| || |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||||  | ||     || |  || || || || || ||     || |   |    || || |   ||| |  |      |||  | |    |   | |  | |                                                                        
GTAGCATCGGTACAGGTTACGATCTATCGGTCACCACTTTCTCCCCTGATGGCCGCGTTTTCCAGATCGAGTATGCCGCTAAAGCCGTCGACAACAGCGGgttggtacttatcattattattattattattattattattattatacttttaaattcgtggttttaaaattgaaaaaaagagtttatttaataattatgagtatgttttttttttttaaatgattttgtaatttttgtattggtagtgatcttagatttgaaactttgttgcag

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 5'ss of exon 1
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaatt--ctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgctaagaaa---gggtgggagaaatgaac---ggaacctcaaaatt------------------------
| ||||| |||||||| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||| ||  ||  |||||||    | ||     |||  |  | |  | | | || | ||    ||  || |    |||    || | |||    ||    | |||| |                        
GTAGCATTGGAACTGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTACGCCGCTAAAGCTGTCGACAACAGTGGgttagttggctttatcttcttcgatcttcgccctttagtagatcggatttagct-tctgaaaactttgagattttggttatcgacacgaattagggtttgttaaaagtctttccctttttttttcttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545358|gb|CF513590.1|CF513590
EST:     CAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: CAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|87584053|gb|DY473356.1|DY473356
EST:     GCCGCGTTTTCCAGATTCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACCGTCATTCGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GCCGCGTTTTCCAGA-TCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATT-GGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110712939|gb|EE088423.1|EE088423
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351026032|gb|FQ428044.1|FQ428044
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351016637|gb|FQ424064.1|FQ424064
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110689940|gb|EE066605.1|EE066605
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|161710249|gb|FC058959.1|FC058959
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110405352|gb|EC970893.1|EC970893
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110719773|gb|EE095192.1|EE095192
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|37185131|gb|CF604484.1|CF604484
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110720841|gb|EE097126.1|EE097126
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|34545280|gb|CF513512.1|CF513512
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|161715533|gb|FC069462.1|FC069462
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|349829839|gb|FQ422152.1|FQ422152
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351012831|gb|FQ430394.1|FQ430394
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110702145|gb|EE080525.1|EE080525
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|71880094|gb|DT029149.1|DT029149
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351017561|gb|FQ435914.1|FQ435914
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|34543966|gb|CF512198.1|CF512198
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|71880613|gb|DT029668.1|DT029668
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110720821|gb|EE097078.1|EE097078
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110718292|gb|EE094957.1|EE094957
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351033938|gb|FQ462993.1|FQ462993
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCCAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110727594|gb|EE104529.1|EE104529
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|294963862|gb|GW836737.1|GW836737
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110707900|gb|EE084829.1|EE084829
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351023141|gb|FQ432524.1|FQ432524
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|349823527|gb|FQ414937.1|FQ414937
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|71879184|gb|DT028239.1|DT028239
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|161719434|gb|FC067375.1|FC067375
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351029065|gb|FQ435265.1|FQ435265
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|161712773|gb|FC061997.1|FC061997
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110428899|gb|EC995383.1|EC995383
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|37184434|gb|CF603788.1|CF603788
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110713723|gb|EE089893.1|EE089893
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|110686023|gb|EE063265.1|EE063265
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|30253109|gb|CB970660.1|CB970660
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
EST: gi|351021754|gb|FQ437139.1|FQ437139
EST:     GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGG                         GACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG
genomic: GGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctc ... gttgttccagGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGgttaattctccatcttctctttttttttttttttttttaacctaaatcatctgtttggttgctaagaaagggtgggagaaatgaacggaacctcaaaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacggaa