Sequence
atgc intronic sequence ATGC exonic sequenceGATTGGGAGCACAGATCCTAATCTGGGTATTCCTTGTTCCTCCAAAGCCGCAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACgtgagtgtctctcttgattcggcccttgtgatgggattgcatgatcgttaattcaattgggtgtctcttatttttcttattttcattctgcttctgatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os12g03730.1 (Oryza sativa), 5'ss of exon 1
GATTGGGAGCACAGATCCTAATCTGGGTATTCCTTGTTCCTCCAAAGCCGCAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACgtgagtg-----tctctcttgattcggcccttgtgatgg-gattgcatgatcgttaattcaattgggtgtctcttattttt-cttattttcattctgcttctgatca
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-----ATGGCGTCATCACAGGAGTTCGAGGCTAATGACCCACAGCAGCTGCACGCC-----AAGCCCAAGAGGCTCTACCAAGTCTGGAAGGGAAACAACgtacctgctctttctttctttctttctttcttgctccagcgatctggctacagcttcttcaacttcatagcagcgaggtagactgattttccttcattttgcag---
upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 1
GATTGGGAGCACAGATCCTAATCTGGGTATTCCTTGTTCCTCCAAAGCCGCAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACgtgagtg-tctctcttgattcggcccttgtgatgg-gattgcatgatcgttaattcaattgggtgtctcttattttt-cttattttcattctgcttctgatca
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-----ATGGCGTCATCACAGGAGTTCGAGGCTAATGACCCACAGCAGCTGCACGCC-----AAGCCCAAGAGGCTCTACCAAGTCTGGAAGGGAAACAACgtgcctgctctttctttctttctttcttgctccagcgatctggcttcagcttcttcaacttcatagctgagaggtagactggttttccttcattttgcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712990|gb|FC062116.1|FC062116EST: CAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAAC AGATTTTTCTGTGGTGGAAGATTGATCTTTGGTCCTGATGTGGCATCCCTC
genomic: CAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACgtgagtgtct ... gtattgccagAGATTTTTCTGTGGTGGAAGATTGATCTTTGGTCCTGATGTGGCATCCCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATTGGGAGCACAGATCCTAATCTGGGTATTCCTTGTTCCTCCAAAGCCGCAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACgtgagtgtctctcttgattcggcccttgtgatgggattgcatgatcgttaattcaattgggtgtctcttatttttcttattttcattctgcttctgatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG