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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc...

Basic information

species Vitis vinifera
transcript Vv08s0007g08370.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G34570.1 (Glycine max), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc--------
 ||||||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||   |  | |||| |   |  | |  | ||||  || |  |||     | ||  |   || ||  || ||| ||  || |||   |||  |||   |         
CGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgtt--gttaacttctcttattcttataatcattta-atgtctttc-----ttttgtttaattgattgtctgatatagcttcattatcgtggtttataataagttatca

upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G05090.1 (Glycine max), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctt-tgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc---
 ||   |||||||||||||||||| |||||||| ||||||||||| |  || |||||||| || |||||||| ||||||||||||||||||||||||||||||  ||   ||| ||  |||  |  |||  ||||   ||| |||     ||  |   |  ||  | |    | || | ||    | ||    | ||||||   
TGCTATTAGGGTTCCAAAGAAGGTCTTGCAGTTCGCTGGAATCGATGGTGTCTTCACTTCCTCAAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGgttcaattctttttttcttctcataatgtctatttttctttaatt----gattatcagatattgctttattaacttgatttatggtaaggttttaaatctcggt

upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G09370.1 (Glycine max), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatct-atttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagttt--atttgagtgaattaatctc
||| ||||||||||| ||||||||  ||||||||||||| || || || || ||||| || |||||||| || ||||| ||||| || || ||||| |||||||| | |   |  | |  |   |||| || ||| ||  |  |     |   |    |  |||||   |  ||| | |||   |||  | ||    |||   
GGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTTGCTGGTATTGATGATGTTTTCACCTCCTCCAGGGGATCCACCAAGACCCTTGGCAACTTCGTTAAGgtttgtttttggtattcttacaagtttgctgcttttgacattttcaactatcatgaaaatttttatggacgaattaaggttgtaattccaatgtcacaat---

upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G02190.1 (Glycine max), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgag----tgaattaatctc---
||| ||||||||||| ||||||||  ||||||| || || || || || || ||||| || ||||| || || ||||| |||||||| || ||||| |||||||| | ||||| |||  |   ||||||  |||  ||   |||  | | ||   | |||    | |  | ||||| |   | ||  |    ||  | ||       
GGCGGCTAGGGTTCCCAAGAAGGTGCTGCAGTTCGCGGGGATTGATGATGTTTTCACCTCCTCCAGAGGATCCACCAAGACCCTCGGCAACTTCGTTAAGgtttg-tgtatttttttaccaa-tttgttacttttcat---attttagattgc--cgacgacattgtaaaaatttagggcaaattagggtcgtgcttcaaatgtgac

upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S10_190V6.1 (Physcomitrella patens), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttga-gtgaattaatctc-----
 |||||  | || || |||||||||||||||||||| || || ||||| |||||||| |||||| | || || ||||| |||||||| || ||||| ||||  ||| ||  ||  |  |  |   |  |   || |  ||  |    || |    |||  || ||  | |   |   | |  | ||  | | ||| |  |      
CGCCGCCCGCGTGCCCAAGAAGGTTTTGCAGTTTGCCGGTATTGAGGATGTGTTCACCTCTTCCCGCGGCTCCACCAAGACCCTCGGTAACTTCGTGAAGg--tgagctggtt--tcattcggaatact--cttcgtcttagtgatgaagtaggcctaatttgattgtaatgctgtcgatagtatgttgagcattgacttgtgatg

upper sequence: Vv08s0007g08370.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S400_15V6.1 (Physcomitrella patens), 5'ss of exon 1
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttg---attcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc
 || ||  | || || ||||||||||||||||| || || || ||||| || ||||| |||||| | || || ||||| |||||||| |||||||| |||||  |     || ||| |   |  |  |   | ||  ||     | |  |  |  |    |      | |   ||||      |     | ||   || ||| 
CGCTGCACGCGTGCCCAAGAAGGTTTTGCAGTTCGCCGGTATTGAGGATGTTTTCACCTCTTCCCGCGGATCCACCAAGACCCTCGGTAATTTCGTGAAGgtgagcaaatttgcttagggcgtgtgatgcttgtgtgttaatgtactgtattaaatcctgattagggtttctcgattcggaactg--aaattgtcctagtct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18459038|gb|BM437316.1|BM437316
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110414697|gb|EC980542.1|EC980542
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110417512|gb|EC983575.1|EC983575
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGATTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|352790875|gb|FQ475512.1|FQ475512
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTTGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71872581|gb|DT021636.1|DT021636
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110707368|gb|EE083710.1|EE083710
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110427555|gb|EC994002.1|EC994002
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22009544|gb|BQ794578.1|BQ794578
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|161716402|gb|FC064915.1|FC064915
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34319893|gb|CF372647.1|CF372647
EST:     CTCGGAAATTTCGTCAAG                         ACTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACTCCTGACTTC
genomic: CTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34415769|gb|CF414523.1|CF414523
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22014904|gb|BQ799938.1|BQ799938
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71868640|gb|DT017695.1|DT017695
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|27585822|gb|CB008517.1|CB008517
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110411956|gb|EC977687.1|EC977687
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110686444|gb|EE064092.1|EE064092
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTNGA-GACTTATGCGTACCTCACACCTGACTT
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCT-GAAGACTTATGCGTACCTCACCCCTGACTT
EST: gi|161714950|gb|FC064233.1|FC064233
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110383958|gb|EC948366.1|EC948366
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110717481|gb|EE093374.1|EE093374
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110361084|gb|EC924537.1|EC924537
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGATTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22008712|gb|BQ793746.1|BQ793746
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|32245834|gb|CD711653.1|CD711653
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22014290|gb|BQ799324.1|BQ799324
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110381372|gb|EC946701.1|EC946701
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22012373|gb|BQ797407.1|BQ797407
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|351026484|gb|FQ428496.1|FQ428496
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|37190113|gb|CF609462.1|CF609462
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22014910|gb|BQ799944.1|BQ799944
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|77578653|gb|DV218112.1|DV218112
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110701664|gb|EE079492.1|EE079492
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71874820|gb|DT023875.1|DT023875
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34416370|gb|CF415124.1|CF415124
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34318930|gb|CF371684.1|CF371684
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71876176|gb|DT025231.1|DT025231
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34363770|gb|CF405355.1|CF405355
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110389893|gb|EC954766.1|EC954766
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110371260|gb|EC935133.1|EC935133
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|77583720|gb|DV220895.1|DV220895
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|27579187|gb|CB001882.1|CB001882
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110699379|gb|EE076336.1|EE076336
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110724651|gb|EE100664.1|EE100664
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTC-CACCTGACTT-
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|37184797|gb|CF604151.1|CF604151
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71885872|gb|DT034927.1|DT034927
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|34319456|gb|CF372210.1|CF372210
EST:     CCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: CCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110364137|gb|EC927784.1|EC927784
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22012314|gb|BQ797348.1|BQ797348
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110373727|gb|EC938031.1|EC938031
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110418121|gb|EC984240.1|EC984240
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110380240|gb|EC945488.1|EC945488
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22014463|gb|BQ799497.1|BQ799497
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71865885|gb|DT014940.1|DT014940
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|77579494|gb|DV218585.1|DV218585
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110723458|gb|EE100792.1|EE100792
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110686919|gb|EE063876.1|EE063876
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110384690|gb|EC949147.1|EC949147
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110408743|gb|EC974384.1|EC974384
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22014461|gb|BQ799495.1|BQ799495
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110361645|gb|EC925134.1|EC925134
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|33406008|gb|CF211635.1|CF211635
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|33406089|gb|CF211716.1|CF211716
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|22008293|gb|BQ793327.1|BQ793327
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110428095|gb|EC994556.1|EC994556
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110424099|gb|EC990453.1|EC990453
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110416176|gb|EC982138.1|EC982138
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|110414505|gb|EC980338.1|EC980338
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC
EST: gi|71874213|gb|DT023268.1|DT023268
EST:     TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAG                         GCTACCTTTGATTGTCTGCTGAAGACTTATGCTTACCTCACACCTGACTTC
genomic: TGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatcta ... ttctctgcagGCTACCTTTGATTGTCTGCTGAAGACTTATGCGTACCTCACCCCTGACTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCGCTAGGGTTCCAAAGAAGGTTTTGCAGTTTGCTGGAATCGAGGACGTGTTCACTTCTTCCAGGGGTTCAACCAAAACCCTCGGAAATTTCGTCAAGgtttgatctatttctttgtctgctttgttgatttggatttgattcgaaaatgtttctacgtttatcttcagatttaagtttatttgagtgaattaatctc

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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagtgaa