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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAAGATTAATAATCGGTTTAAGAGGGAGGACGCCATAATCAACGGCTGGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagcaattatgcatgtcaattgttttgataatagagttcaattcactgcagatttgtagacatgattcaactttttcaatggtttttgtttttt...

Basic information

species Vitis vinifera
transcript Vv08s0007g08280.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010960|gb|BQ795994.1|BQ795994
EST:     GAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCCTAGAGAAGATGCAGAATGAC
genomic: GAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|26265674|gb|CA816737.1|CA816737
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110359406|gb|EC920838.1|EC920838
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGC
EST: gi|110370926|gb|EC934553.1|EC934553
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110719710|gb|EE095086.1|EE095086
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAGGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110411181|gb|EC976885.1|EC976885
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110718121|gb|EE094594.1|EE094594
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCCTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110379691|gb|EC944905.1|EC944905
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|32458811|gb|CD799985.1|CD799985
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCCCATCATGCATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|32265211|gb|CD716800.1|CD716800
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGG
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGG
EST: gi|45771095|gb|CN006947.1|CN006947
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCGGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110718281|gb|EE094938.1|EE094938
EST:     GGGAGAGTGAACAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110719645|gb|EE094952.1|EE094952
EST:     GGGAGAGTGAACAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110715053|gb|EE092662.1|EE092662
EST:     GGGAGAGTGAACAGGTTCAGAAAACCACATCATGGATCAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|26263682|gb|CA814745.1|CA814745
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110357605|gb|EC921214.1|EC921214
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|32270778|gb|CD719937.1|CD719937
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTT
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTT
EST: gi|37184671|gb|CF604025.1|CF604025
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|110382920|gb|EC947250.1|EC947250
EST:     GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
EST: gi|156738931|gb|EV243052.1|EV243052
EST:     GGGAGAGTGAACAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAG                         AGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC
genomic: GGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagc ... ttttgtgtagAGGAAGCTGGAGGAGAAAAGAGCAAGAGCCTTAGAGAAGATGCAGAATGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCAAGATTAATAATCGGTTTAAGAGGGAGGACGCCATAATCAACGGCTGGGAGAGTGAAGAGGTTCAGAAAACCACATCATGGATGAAGAAAGTCGAGgtaacatagcaattatgcatgtcaattgttttgataatagagttcaattcactgcagatttgtagacatgattcaactttttcaatggtttttgtttttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA