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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGTGGTTTTGGGGATATGGCGATTGCAGCGGCTGCCGTTGTCGTTCCGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttgttccaatttattttattttattttttcgaaattttgattgagtttggtatttctatagatttgatttaattgagctgcttcgtgttagtt...

Basic information

species Vitis vinifera
transcript Vv08s0007g08110.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685332|gb|EE063631.1|EE063631
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|30252575|gb|CB970126.1|CB970126
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|71864165|gb|DT013220.1|DT013220
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|161706024|gb|FC056715.1|FC056715
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|71866396|gb|DT015451.1|DT015451
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|71874295|gb|DT023350.1|DT023350
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|161717359|gb|FC065274.1|FC065274
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|33405255|gb|CF210882.1|CF210882
EST:     CGCCGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|110696361|gb|EE072411.1|EE072411
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|161715416|gb|FC068047.1|FC068047
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
EST: gi|77578022|gb|DV217773.1|DV217773
EST:     CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAG                         GCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG
genomic: CGCTGGGTCTTCTCTTCCTCACCTCCGGCCTTGTAGTTAATCTCATTCAGgtgctttttg ... tttcctgcagGCAGTTTGTTTCATCCTTGTTAGGCCTCTGTCAAAAAGTACATACAGAAGG