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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g07670.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G07700.1 (Glycine max), 5'ss of exon 1
ATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcag
|||||||||||||| || ||||||||  | || |  || || |||||||||||||| || || || ||||||||||||||||||||||||||| |||| ||||||  |   | ||  ||     |  ||   |  |  |  |  |  | ||| ||| | || | |||  |||| || |  |      ||   ||| |          
ATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCTTTGCCAGTTTCCATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctacgtttaaataagatctatattcttttttatattttaaaacttataaagataagaattgctttaatatctagaaaaaaattatggattttga-------

upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G26740.1 (Glycine max), 5'ss of exon 1
ATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcag
|||||||||||||| || ||||||||  | ||||  || || |||||| ||||||| || || || ||||||||||||||||||||||||||| |||| ||||||  | |||||   ||  | |    ||||| ||  ||   |  ||   ||    |  ||  |  ||| |  ||||  ||   | ||   || | |     | | 
ATTCTTCACTACCTAAGGAAGAAGGTTGCCTCCATTCCTTTGCCAGTTGCCATCATTGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGgtttgtctatatatgtttaaataagatctatattattttt--tatctagaaaatttaaggattttgatataattatttttagaaagatt---gaac-acactagaa-

upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G04740.1 (Glycine max), 5'ss of exon 1
ATTCTTCACTACCTGAGCAAGAAGGTGACGTCCACGCCCTTCCCAGTTTCCATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcag
|||||||||||||| || || |||||  | ||||  |||||  | |||||||| || || || || |||||||||||||| ||||||||||| ||||| ||||||| ||| |        ||  ||| | | |  |  ||   | ||  ||| ||| | | |   |  || | |  | ||   |  | | |  || ||   ||  | 
ATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATACCCTTGACCGTTTCCATTATTGCTGAGGTTGATATCTACAAGTTAGATCCATGGGACTTACCAGgtttgcctctct-------tctagttccttttttttttttggtattttgttacaaagatatttaataaatgatacatggacactcatatacaaatttacacctagaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871731|gb|DT020786.1|DT020786
EST:     CATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTG                         GTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATC
genomic: CATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttct ... atgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATC