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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGGTATCTACGATGACGATGTCCATGCGGGTGATGGTGAGTTTGAGATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccctcctttgaaatccccctatttgtttcttactttctttaaattatcctatttggagctctgttttgttaaataattgataaaatttctgggg...

Basic information

species Vitis vinifera
transcript Vv08s0007g07540.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715506|gb|FC067098.1|FC067098
EST:     ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG                         GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
EST: gi|122689451|gb|EC939681.1|EC939681
EST:     ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG                         GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
EST: gi|294966866|gb|GW839741.1|GW839741
EST:     ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG                         GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAGGGTATCTACGATGACGATGTCCATGCGGGTGATGGTGAGTTTGAGATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccctcctttgaaatccccctatttgtttcttactttctttaaattatcctatttggagctctgttttgttaaataattgataaaatttctgggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa