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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCCGTGACTGAAGCGACCTCATTCAATAGTGACAAAGAAGCCGAAGATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctctctctttttctatcactcctcatgcgcgcattttcgcagtcaaacgcttacgtgtttatgattatttggctgtttgcttcgttctttttg...

Basic information

species Vitis vinifera
transcript Vv08s0007g07290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584274|gb|CB006969.1|CB006969
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110707560|gb|EE084097.1|EE084097
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110392292|gb|EC957611.1|EC957611
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|18458812|gb|BM437090.1|BM437090
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71868753|gb|DT017808.1|DT017808
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|77578922|gb|DV218274.1|DV218274
EST:     CGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: CGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|32271452|gb|CD720611.1|CD720611
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|32271176|gb|CD720335.1|CD720335
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71887970|gb|DT037025.1|DT037025
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|161706472|gb|FC054993.1|FC054993
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|37184327|gb|CF603681.1|CF603681
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71874537|gb|DT023592.1|DT023592
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71871671|gb|DT020726.1|DT020726
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110715382|gb|EE093367.1|EE093367
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110412503|gb|EC978253.1|EC978253
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71868631|gb|DT017686.1|DT017686
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110368476|gb|EC932455.1|EC932455
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|161718984|gb|FC068639.1|FC068639
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110409610|gb|EC975276.1|EC975276
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110395237|gb|EC960891.1|EC960891
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71866632|gb|DT015687.1|DT015687
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110706237|gb|EE081585.1|EE081585
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110709127|gb|EE084314.1|EE084314
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|87586503|gb|DY474749.1|DY474749
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110366710|gb|EC930626.1|EC930626
EST:     ATCGGGAACTCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|33409969|gb|CF215596.1|CF215596
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71856869|gb|DT005924.1|DT005924
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|37184453|gb|CF603807.1|CF603807
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71874294|gb|DT023349.1|DT023349
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|37183972|gb|CF603326.1|CF603326
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|30135098|gb|CB920436.1|CB920436
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110398076|gb|EC964178.1|EC964178
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71865585|gb|DT014640.1|DT014640
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110394098|gb|EC958585.1|EC958585
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110709277|gb|EE084597.1|EE084597
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|349827438|gb|FQ422306.1|FQ422306
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|32249585|gb|CD715404.1|CD715404
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|161718168|gb|FC068899.1|FC068899
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|32248165|gb|CD713984.1|CD713984
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTCAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110393740|gb|EC959193.1|EC959193
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|71855507|gb|DT004562.1|DT004562
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
EST: gi|110393896|gb|EC959460.1|EC959460
EST:     ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCCCTGAAG                         CACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA
genomic: ATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctc ... ctttgaacagCACAAGTTTGTATTTTGGTACACTCGTCGAACACCTGGAGTTCGAACCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAATCCGTGACTGAAGCGACCTCATTCAATAGTGACAAAGAAGCCGAAGATCGGGAACGCCAGGCTCGTGATCTCAAAGCTGGTCTTCATCCTCTGAAGgtctggtctctctctttttctatcactcctcatgcgcgcattttcgcagtcaaacgcttacgtgtttatgattatttggctgtttgcttcgttctttttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc