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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAAAGAAGGGATTGAATGGGGAGTGTGAAAGCGGTGGCTGTTATCGCCGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctctcttttcttcttctttctatagattgtattctttatatagaaataattatgaatggctgattctactatgcattcag

Basic information

species Vitis vinifera
transcript Vv08s0007g07280.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825158|gb|FQ415705.1|FQ415705
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCATTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|26263916|gb|CA814979.1|CA814979
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|71870823|gb|DT019878.1|DT019878
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|110429247|gb|EC995737.1|EC995737
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATTACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|110392958|gb|EC957655.1|EC957655
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|32456166|gb|CD797340.1|CD797340
EST:     TCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCA
genomic: TCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCC--ATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCA
EST: gi|351040393|gb|FQ434526.1|FQ434526
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|71867553|gb|DT016608.1|DT016608
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|110389316|gb|EC954144.1|EC954144
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
EST: gi|37184575|gb|CF603929.1|CF603929
EST:     CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCG                         GGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG
genomic: CGGCAACGCCAACGTCAGAGGCTCTCTTCACTTTATCCAAGATCCCGCCGgtttctctct ... atgcattcagGGAGTACCCATGTGAAAGGGAGGATCACTGGCCTCACACCTGGTCTTCATG