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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGGAAACAGGCCGATGAGGAAGTTGTTTGTAATGATTTCGCTAAATGTGGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagattaattgcattgcttttgaagttttcgttccaattatgtagatcagtgcgtacctctgtatatgcctctgcaatattttcagtttggtttt...

Basic information

species Vitis vinifera
transcript Vv08s0007g06550.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720919|gb|FC070323.1|FC070323
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351041060|gb|FQ443836.1|FQ443836
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCCGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351017551|gb|FQ435904.1|FQ435904
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|352786912|gb|FQ481287.1|FQ481287
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|161718740|gb|FC066632.1|FC066632
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|349826952|gb|FQ419043.1|FQ419043
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351014366|gb|FQ437368.1|FQ437368
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351033570|gb|FQ447729.1|FQ447729
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351012123|gb|FQ429929.1|FQ429929
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|351026468|gb|FQ428480.1|FQ428480
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
EST: gi|349829079|gb|FQ419611.1|FQ419611
EST:     GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAG                         GTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT
genomic: GGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagat ... gccatatcagGTTTGGTGTCTGATGCATTTCATTTGACATTTGGCTGCGGACTCTTGACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGGGAAACAGGCCGATGAGGAAGTTGTTTGTAATGATTTCGCTAAATGTGGCATACTCTACTGCAGAATTAATGATCGGCCTTTTCACAGGACGTGCAGgtatagagattaattgcattgcttttgaagttttcgttccaattatgtagatcagtgcgtacctctgtatatgcctctgcaatattttcagtttggtttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG