1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGAGGAGTATAGAAAAGCTCTGTACGGAGAGATAACTCACAAGGCTCTCTTGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattttcgacttttgtgcagttgtttttgggttttttcttcctgggaatagactcgtctctttccacttttttttttttttttctttttctcttt...
species | Vitis vinifera |
transcript | Vv08s0007g05350.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110731628|gb|EE106216.1|EE106216
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|30299817|gb|CB976611.1|CB976611
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110395612|gb|EC961279.1|EC961279
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110429697|gb|EC996199.1|EC996199
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: CTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|161719017|gb|FC067637.1|FC067637
genomic: CTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|26258618|gb|CA809681.1|CA809681
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACCCTTCCTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|33403789|gb|CF209416.1|CF209416
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110725316|gb|EE101677.1|EE101677
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|161712968|gb|FC062094.1|FC062094
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110730112|gb|EE106820.1|EE106820
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|110713079|gb|EE088696.1|EE088696
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|71877278|gb|DT026333.1|DT026333
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGATGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|26266814|gb|CA817877.1|CA817877
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|294965827|gb|GW837310.1|GW837310
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|26257149|gb|CA808212.1|CA808212
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGCGGAGTATTCGGAAACCGAGEST: gi|110731791|gb|EE106512.1|EE106512
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|110688614|gb|EE067366.1|EE067366
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|294966056|gb|GW837423.1|GW837423
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|110713855|gb|EE090151.1|EE090151
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGTCCATGGCTCAG ATCTATAGAAAGATCGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAGEST: gi|71877965|gb|DT027020.1|DT027020
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|161715593|gb|FC068349.1|FC068349
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAGEST: gi|110712773|gb|EE088110.1|EE088110
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
EST: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAG ATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACTGAG
genomic: TGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattt ... cttattgcagATCTATAGAAAGATTGGTGAGAAATATGGGGTGGAGTATTCGGAAACCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGAGTATAGAAAAGCTCTGTACGGAGAGATAACTCACAAGGCTCTCTTGGTTGATGCCGTCGGTACTCTTCTTGTTCCCTCACAGCCCATGGCTCAGgtttgcattttcgacttttgtgcagttgtttttgggttttttcttcctgggaatagactcgtctctttccacttttttttttttttttctttttctcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcc