Sequence
atgc intronic sequence ATGC exonic sequenceTCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttttttcttatttaatgctatgtttggaggaacagaaaatagagtaaataaaataaaatctagtggtttttgctattttggttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g05280.1 (Oryza sativa), 5'ss of exon 1
TCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCC------GTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttttttcttatttaatgctatgtttggaggaacagaaaatagagtaaataaaataaa---atctagtggtttttgctattttggttta
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------AAGATCCTGCTCATCGGGGACTCGGCCGTCGGCAAGAGCAGTCTGCTCGTCAGCTTCGTCTCCGCCTCCCACATCGACGACGAAATCGCTCCCACCATAGgtgcgta--cggatgccttccccccgtcctctctggatctcgttgattcctgcctcctcctcctgtgctcaatatgtccgcttccttgccttgtcccgatca-
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G20970.1 (Glycine max), 5'ss of exon 1
TCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttt-------tttcttatttaatgctatgtttggaggaacagaaaatagagtaaataaaataaaatctagtggtttttgctattttggttta
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TCCTTCAAGATCTTGTTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAACTCTGCTGAAGATATTGCTCCCACAATTGgtaattcattgctgcttccaaaaaattgttctttctctctcatgcttgttactgcaaaagttttttt---ttggacaaaaccatgaagagaatacttttaaaa----
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G06780.1 (Glycine max), 5'ss of exon 1
TCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttttttcttatttaatgctatgtttggaggaacagaa--aatagagtaaataaaataaaatctagtggtttttgctattttggttta-
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TCCTTCAAGATCTTGCTGATCGGTGACTCTGCTGTGGGAAAAAGTAGCCTCCTTGTTAGCTTCATCTCCAATTCTGCTGAAGATATTGCCCCCACAATTGgtatttcattg-ctgcttccaaaaaattgttctttctctctcatgcttgttactaaaaatgttttttggactaaaccatgaaaagaatattatttt--tttaa
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G03530.1 (Arabidopsis thaliana), 5'ss of exon 1
TCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttttttcttatttaatgctatgtttggaggaacagaaaatagagtaaataaaataaaatcta-gtggtttttgctattttggttta--
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TCTTTTAAGATCTTGTTGATTGGTGATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGATCTTGCTCCTACTATTGgtaaa--atagttttcttcaacttgtttcct-ctatgatttttgaaaaagggtctcagatttatgtcttaagagctctgaaattgatatgaagctaagtcatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110391637|gb|EC956625.1|EC956625EST: TCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTG GTGTGGATTTTAAAATCAAGCAGCTAACTGTTGGTGGGAAGAGATTGAAGC
genomic: TCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtc ... tgatttgcagGTGTGGATTTTAAAATCAAGCAGCTAACTGTTGGTGGGAAGAGATTGAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATTCAAGATCTTGCTGATCGGCGACTCCGCCGTCGGCAAAAGTAGTCTTCTCGTCAGTTTCATCTCCAGCTCCGTTGAAGATCTCGCTCCTACTATTGgtacttcgtcctctgttttttcttatttaatgctatgtttggaggaacagaaaatagagtaaataaaataaaatctagtggtttttgctattttggttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa