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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACAAACCCAACACTGGTTTTGCAGATACATCATCGATCGGTCAATCCATGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttcttctccctatttcatttcatatgatttttttttttttcttttgggaatttagtctattttttttctctgatttgttgatatatttgtgaa...

Basic information

species Vitis vinifera
transcript Vv08s0007g03610.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71884694|gb|DT033749.1|DT033749
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71857656|gb|DT006711.1|DT006711
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71859550|gb|DT008605.1|DT008605
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|30255667|gb|CB971799.1|CB971799
EST:     GATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGATCACGCCAGGGGAGCT
genomic: GATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGG-TTAAGCCAGGGGAACT
EST: gi|71856545|gb|DT005600.1|DT005600
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71872394|gb|DT021449.1|DT021449
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|161718345|gb|FC064769.1|FC064769
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|110380711|gb|EC945999.1|EC945999
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|110728455|gb|EE104038.1|EE104038
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|161707787|gb|FC056440.1|FC056440
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71856042|gb|DT005097.1|DT005097
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|37190404|gb|CF609753.1|CF609753
EST:     GGNCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: GG-CGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71859937|gb|DT008992.1|DT008992
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71858668|gb|DT007723.1|DT007723
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71860428|gb|DT009483.1|DT009483
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71861795|gb|DT010850.1|DT010850
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71887849|gb|DT036904.1|DT036904
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71862830|gb|DT011885.1|DT011885
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|351014525|gb|FQ437527.1|FQ437527
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|349827863|gb|FQ422731.1|FQ422731
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71860964|gb|DT010019.1|DT010019
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71863493|gb|DT012548.1|DT012548
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG
EST: gi|71857725|gb|DT006780.1|DT006780
EST:     TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCT                         GGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAGCTG
genomic: TGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttc ... gtgctttcagGGATATGCAGCTAGGGAGTTTGCCAAGCAAGGGGTTAAGCCAGGGGAACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACAAACCCAACACTGGTTTTGCAGATACATCATCGATCGGTCAATCCATGGCGGAGAAGCATTTTAAATACGTGATCCTCGGCGGTGGCGTTTCTGCTgtaacttttcttctccctatttcatttcatatgatttttttttttttcttttgggaatttagtctattttttttctctgatttgttgatatatttgtgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc