Sequence
atgc intronic sequence ATGC exonic sequenceTCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgttttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G08610.1 (Glycine max), 5'ss of exon 1
--------------------------TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgttttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag
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CATGGAGATTGGCTTGCCTTCCAATGTTAGACATGTTGCACATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCTTGCCTGTGGAGTTTGAACCTGAAgt-cccataagggctactagtctcaactcacttcatgt-gttatgccaaatatatttttt----agacttatgtttgagatctatgatatatatttga---tttttatt-----------------
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA19G38120.1 (Glycine max), 5'ss of exon 1
TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgttttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag-------
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TGAGACACGTGGCACATGTCACCTTTGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTTGAGTTCGAACCCGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaggttcttgaggaatcttggggtttcttc-------aaaatttcatctttcttcgaattttgttgccattggaatcgtgcttttttttttttaatgaggtttggt
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 1
TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgt--tttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag
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TGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggggtttcttcaaaatttaatctttcttcgaattttgttgcccctggaatcgggcttttttttttcctctaaggtgtggttcttcaaatttag--
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgtt-ttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag---
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TTAGACATGTCGCTCATGTTACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCCTGTTGAGTTTGAACCTGAAGTCCCTAGACGAGCTCCTAGTGCAAGgttcgttt-acttgtaacgatgatagatgtttctg-gtaatgtttggtgattaggattctcttagttcttgttt--tagttaacaaattcttgggaataatgtt
upper sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S159_36V6.1 (Physcomitrella patens), 5'ss of exon 2
TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttat----ttttctttttttggaaaattctgtttt-gattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag-------------
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TTGAACATGTTGCTCATGTTACTTTTGATCGTTACAATGGGTTTCTGGGTTTGCCCGAGGAGTACGAGCACGAAGTTCCTAGGCCCACTCCTAGTGCAAGgtttggcttcattctataccttataaaattgccagtttttattgtggggggtaccagaaagcagattgggatgtcaaatgttcattgcgggctcactgtgcgaactttcatggtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33403330|gb|CF208957.1|CF208957EST: TGCCCAGAAGACCTCCTAGTGCCAG TGCAAATGTTTTTGGAGTTTCCACAGAGTCTATGCAGCTTTCATTTGACTC
genomic: TGCCCAGAAGACCTCCTAGTGCCAGgtcagtttga ... tcacctgcagTGCAAATGTTTTTGGAGTTTCCACAGAGTCTATGCAGCTTTCATTTGACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgttttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa