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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACGAGCAATTGTAATCGGAAACGGCTTCGCAGGCTCAGAGAATCAGAGCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTTgtgagtaatactgcagtgcttgcattgatttgtctatgttatgttttcaatatttatttgtattctgcactgttgttcattcattttttggcaagctttt...

Basic information

species Vitis vinifera
transcript Vv08s0007g02890.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g02890.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G35630.1 (Glycine max), 5'ss of exon 2
CAGACGAGCAATTGTAATCGGAAACGGCTTCGCAGGCTCAGAGAATCAGAGCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTTgtgagtaatactgcagtgct-tgcattgatttgtctatgttatgttttcaatatttatttgtattctgcactgttgttcattcattttttggcaagctttt
  | |||||  |||| ||||||||||||||||| ||| | ||||||||| ||||||| ||||| |||||| | ||  ||||||| | ||| ||||||| ||| || | | || |  |  | | | || |||| |  ||       |  |  |||| | ||| ||         |  ||  || ||                
TCGGCGAGCCGTTGTCATCGGAAACGGCTTCGCCGGCGCTGAGAATCAGTGCATTGGTTTGGTCCGTGCTCTCGGTTTCTCCAACCGCCACTCCTTATATgtaagcatttcttctttattcttcgtttatttataaataaacaaatagc--tattgaattgaatcgaatggaatgattggtt-atag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857885|gb|DT006940.1|DT006940
EST:     GCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTT                         CGTGTTACTAGACCAAGAGGAGGAATACATGAGCGGCTTCATTGGCTTCCA
genomic: GCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTTgtgagtaata ... actttggcagCGTGTTACTAGACCAAGAGGAGGAATACATGAGCGGCTTCATTGGCTTCCA
EST: gi|71856055|gb|DT005110.1|DT005110
EST:     GCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTT                         CGTGTTACTAGACCAAGAGGAGGAATACATGAGCGGCTTCATTGGCTTCCA
genomic: GCATTGGCTTGGTTCGTGCTTTGGGGCTCTCCAATCACCAATCCTTATTTgtgagtaata ... actttggcagCGTGTTACTAGACCAAGAGGAGGAATACATGAGCGGCTTCATTGGCTTCCA