1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGATCGAAAGTCGGATCAAGGAAGAAGAAGATGAAACGGGTGTTCGGAGTGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttgttgattcatgttgatctttttttttcttttgacgaattttaatttatttctctatcttcttgcctgaatttactagttcgtttgtattgg...
species | Vitis vinifera |
transcript | Vv08s0007g02300.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAAGCTTGATGCCEST: gi|110686349|gb|EE063885.1|EE063885
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAGGCTTGATGCT
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAAGCTTGATGCCEST: gi|110690195|gb|EE067084.1|EE067084
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAGGCTTGATGCT
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAAGCTTGATGCCEST: gi|71859039|gb|DT008094.1|DT008094
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAGGCTTGATGCT
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACGAAG-CTTGATGCEST: gi|71868774|gb|DT017829.1|DT017829
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTAC-AAGGCTTGATGC
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAAGCTTGATGCCEST: gi|30330198|gb|CD013460.1|CD013460
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAGGCTTGATGCT
EST: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGG ATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAAGCTTGATGCC
genomic: TGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttg ... ttgtttgcagATTAATAAAAGAGGTGAAACTGTGGATGAGAAGATTACAAGGCTTGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGATCGAAAGTCGGATCAAGGAAGAAGAAGATGAAACGGGTGTTCGGAGTGAAGAAAGAGAAGGAACCCCCTCCTTCAGTTCAAGATGCTTCCGATAGGgttcgttttgttgattcatgttgatctttttttttcttttgacgaattttaatttatttctctatcttcttgcctgaatttactagttcgtttgtattgg
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG