Sequence
atgc intronic sequence ATGC exonic sequenceAGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatctccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggatcgaggttcatatcgcttaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g01540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g63160.1 (Oryza sativa), 5'ss of exon 1
AGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgta--atctccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggatcgaggttcatatcgcttaa-
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ACGCTGATAGCGCGCGGGATACCCGGGCGCTCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAACCAACTCGACCCCCAAGTCAAGCGCAAGCCCTTCACTGgtacaatctgcctttc-atccag--tagtatctgtatcctataggatacgtgatgttaaccttaatccaaagagtatttgtcttgtctatgaggcaatgctag
upper sequence: Vv08s0007g01540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G169316_T01 (Zea mays), 5'ss of exon 1
AGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatctccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggat-cgaggttcatatcgcttaa
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ACGCTGATCGCGCGTGGCATCCCGGGCCGCTCCGGCAAGTCCTGCCGCCTGCGCTGGTGCAATCAGCTCGACCCCCAAGTCAAGCGCAAGCCTTTCACTGgtaccgcccttttcaatctttacttacattgctattttgagcccatgataaatgtatcaaaacctaagcttggcctcacatatgcagtatctatgtgata-
upper sequence: Vv08s0007g01540.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G26650.1 (Glycine max), 5'ss of exon 1
AGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatc--tccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggat--cgaggttcatatcgcttaa
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AGCCTCATTGCGCGCGGAATCAGCGGAAGATCCGGCAAGTCATGCCGGCTCCGGTGGTGCAACCAGCTTGACCCCGCCGTCAAGCGCAAACCCTTCACCGgtacctaatcggtttggaattgaatt--ttgttttgtttcggtttggtttaatttgaatgttttcgaaaattgatctttggagagtagggatgagaatgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713519|gb|FC064060.1|FC064060EST: GCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTG ATGAGGAGGATCGTATCATAGTTGCTGCACATGCAATCCATGGAAACAAAT
genomic: GCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatctcca ... gttgttgcagATGAGGAGGATCGTATCATAGTTGCTGCACATGCAATCCATGGAAACAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTCTGATCGCCCGTGGAATTGCTGGGAGATCCGGCAAGTCCTGCCGGCTGCGCTGGTGTAATCAGCTTGACCCCTCTGTTAAGCGCAAGCCCTTTACTGgtaatctccatgtcgatctaaattggtttttcatttccagaatttttttaaaagcttcttttttctttttggatttcggatcgaggttcatatcgcttaa
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