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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTCGCAGTCCACGCCGCCTTCATCTCCTCCGGCTACCTCCTCACTGCCACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcacctctctctctcaattctctctctctatctatatctatatctatatctatatctatatgtgctttggttaattgggtgtatag

Basic information

species Vitis vinifera
transcript Vv08s0007g01340.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824491|gb|FQ413158.1|FQ413158
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110372149|gb|EC936298.1|EC936298
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110718881|gb|EE096218.1|EE096218
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110723305|gb|EE100463.1|EE100463
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110356854|gb|EC919981.1|EC919981
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|351023717|gb|FQ448268.1|FQ448268
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110688830|gb|EE067830.1|EE067830
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|352785766|gb|FQ475769.1|FQ475769
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACCG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110718248|gb|EE094865.1|EE094865
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|110731453|gb|EE105880.1|EE105880
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|351025561|gb|FQ437049.1|FQ437049
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
EST: gi|349830477|gb|FQ416775.1|FQ416775
EST:     CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAG                         ATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG
genomic: CACCGGTAACCCCGCCTTCTCCGAAACCGCTCTCTCTTCTACCTCTACAGgtccgtgcac ... gggtgtatagATGAAGTGGGGATTGAGCGATGGAACGAACTTCAGGATGATTATGCCTTCG