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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAAAATATGGCGGACAGGGCAGTGACTATTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttattttcagtgatacagctccgtttggatgctgagacaacgtcggaaaaagaaaataataggaattccgaatattagaggccaaacgagaatac...

Basic information

species Vitis vinifera
transcript Vv07s0151g00900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51989982|gb|CV179437.1|CV179437
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|26259430|gb|CA810493.1|CA810493
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|110423807|gb|EC990158.1|EC990158
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|71877383|gb|DT026438.1|DT026438
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|110361207|gb|EC924663.1|EC924663
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|77581193|gb|DV219524.1|DV219524
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
EST: gi|110371203|gb|EC935035.1|EC935035
EST:     TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTC                         ATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG
genomic: TTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttatt ... tttggtgcagATTATAGATGTTTTGCATCCTGGAAGACCAAATGTTGCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGAAAATATGGCGGACAGGGCAGTGACTATTCGTACAAGGAAGTTCATGACTAATCGTCTTCTCTCGAGGAAGCAATTCgtgagttattttcagtgatacagctccgtttggatgctgagacaacgtcggaaaaagaaaataataggaattccgaatattagaggccaaacgagaatac

- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaata