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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACATCACCGGCGGAGGCTCGATACGGTTCCGCCGAACGACGTCGTTCGGTGATGGCTTCTGTCTGCTCTTCGGCATTGgtatgcgttttcactgtatcaggttctgatctgttttgttcgaattatttatttgttttttttttttttaaatttttttttctagttgtttttgaatcttgagaattattgttgttagtcttttttgggttctttgggttgttggtgagatcgagcttatgattttgtgcag

Basic information

species Vitis vinifera
transcript Vv07s0151g00870.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122691206|gb|EC969245.1|EC969245
EST:     CCGCCGAACGACGTCGTTCGGTGATGGCTTCTGTCTGCTCTTCGGCATTG                         TGAAACTTCGTGGTACTGCTTGGAGATTGATTGAGCTTGGCTGCTCATGTA
genomic: CCGCCGAACGACGTCGTTCGGTGATGGCTTCTGTCTGCTCTTCGGCATTGgtatgcgttt ... ttttgtgcagTGAAACTTCGTGGTACTGCTTGGAGATTGATTGAGCTTGGCTGCTCATGTA