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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGCATCTCCATCATGCCTAGTACGGTCGCCCAGATCAACGGCTCCCATTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttctcacctttatcctaactaagtcgctacctttctcagattgatcaaatttttgggtggattcagatgttttgattcattgtcgtctgtttgg...

Basic information

species Vitis vinifera
transcript Vv07s0151g00860.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055280|gb|FQ441878.1|FQ441878
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|27580560|gb|CB003255.1|CB003255
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351054424|gb|FQ450507.1|FQ450507
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|352790943|gb|FQ479936.1|FQ479936
EST:     TTCGCCGGACCAAGTCTCTCCCACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351054345|gb|FQ450428.1|FQ450428
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351053960|gb|FQ441726.1|FQ441726
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351038630|gb|FQ464496.1|FQ464496
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351041932|gb|FQ456142.1|FQ456142
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351044390|gb|FQ452942.1|FQ452942
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351056109|gb|FQ453571.1|FQ453571
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351057496|gb|FQ440090.1|FQ440090
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351044595|gb|FQ443126.1|FQ443126
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|27579662|gb|CB002357.1|CB002357
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|352790264|gb|FQ481463.1|FQ481463
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351054568|gb|FQ462675.1|FQ462675
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|352798862|gb|FQ478497.1|FQ478497
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|32250149|gb|CD715968.1|CD715968
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351032736|gb|FQ462450.1|FQ462450
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351039837|gb|FQ464875.1|FQ464875
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351037996|gb|FQ460738.1|FQ460738
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351044516|gb|FQ443047.1|FQ443047
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351054394|gb|FQ450477.1|FQ450477
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|352789760|gb|FQ478575.1|FQ478575
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351054311|gb|FQ450394.1|FQ450394
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCCCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351037499|gb|FQ460698.1|FQ460698
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351039712|gb|FQ464750.1|FQ464750
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351038914|gb|FQ457589.1|FQ457589
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351039029|gb|FQ457704.1|FQ457704
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351057344|gb|FQ454026.1|FQ454026
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351055936|gb|FQ453397.1|FQ453397
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCCCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
EST: gi|351053868|gb|FQ441634.1|FQ441634
EST:     TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGAT                         GATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC
genomic: TTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttct ... ttttaagcagGATTATTATATAGATGCTCCTGTTTCAGTTGGAGATGGCTTCTCCTTTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCGCATCTCCATCATGCCTAGTACGGTCGCCCAGATCAACGGCTCCCATTCGCCGGACCAAGTCTCTCCGACTTCGCATCCGATCCAGCTCCGACGATgtacgcttctcacctttatcctaactaagtcgctacctttctcagattgatcaaatttttgggtggattcagatgttttgattcattgtcgtctgtttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC