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ACCGAGATGTTGAGGTGGCTCCAGCCTTAATCTCAGTTCATCCGGACCATAAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatttctcctcttcccagggtttatgtttggttgctgagaaaactggaaaggaaagaaatttaaacttctggttatcaagactttgctgcttag...
species | Vitis vinifera |
transcript | Vv07s0151g00790.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCCCCA AGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAAEST: gi|351025295|gb|FQ434308.1|FQ434308
genomic: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatt ... tcttttacagAGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAA
EST: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCA AGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAAEST: gi|349826552|gb|FQ418643.1|FQ418643
genomic: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatt ... tcttttacagAGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAA
EST: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCA AGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAAEST: gi|122690606|gb|EC954888.1|EC954888
genomic: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatt ... tcttttacagAGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAA
EST: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCA AGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAA
genomic: AAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatt ... tcttttacagAGGGGGTTGTTCGGTGACGCTGGTGGATGATTCTAGTGGACCTCTTCATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGAGATGTTGAGGTGGCTCCAGCCTTAATCTCAGTTCATCCGGACCATAAATTCATCGTAGTCTCCATCGGGTCGGACCTCCGAGTTTTCGATCTCCAgtaagctatttctcctcttcccagggtttatgtttggttgctgagaaaactggaaaggaaagaaatttaaacttctggttatcaagactttgctgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa