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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCGGGTGTTGATGACAACAAAGTGAAGAGTCTGCAGAAGGAGAAGAGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttcttaacagattttttttttttggcgatttatcatttgtttgtagtataattttgaaaatatgaaagaaataagcgaaattattgtagtgggg...

Basic information

species Vitis vinifera
transcript Vv07s0141g00290.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37184040|gb|CF603394.1|CF603394
EST:     AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA                         GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: gi|110368237|gb|EC932208.1|EC932208
EST:     AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA                         GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: gi|110690829|gb|EE068235.1|EE068235
EST:     AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA                         GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: gi|110690342|gb|EE067357.1|EE067357
EST:     AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA                         GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
EST: gi|110374116|gb|EC938663.1|EC938663
EST:     AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAA                         GGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT
genomic: AGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttct ... ggaattttagGGCACAGGTTGTGGGGTGGCCACCGGTTCGGTCCTTCCGGAAGAACATGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAAGCGGGTGTTGATGACAACAAAGTGAAGAGTCTGCAGAAGGAGAAGAGCAAGAGCCTTCTTCCTTGTGGTAATGATCCAGCCAGACCTCCGGCCAAgtgagtttcttaacagattttttttttttggcgatttatcatttgtttgtagtataattttgaaaatatgaaagaaataagcgaaattattgtagtgggg

- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcgaaa