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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAAACCAGGCGTTAGATGAAATCATGACTGATTTTAACTCTAAGTTCCCTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctctaaccaaaccctaacacttctcatctctctctacccctttctctttgaattttaaaattcaccaaggttaggatgagggttagtgttagggt...

Basic information

species Vitis vinifera
transcript Vv07s0130g00310.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712155|gb|FC061527.1|FC061527
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351021979|gb|FQ437766.1|FQ437766
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351049571|gb|FQ429193.1|FQ429193
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349826636|gb|FQ418727.1|FQ418727
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349817579|gb|FQ407369.1|FQ407369
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351018506|gb|FQ424613.1|FQ424613
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349808016|gb|FQ402407.1|FQ402407
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|37184961|gb|CF604314.1|CF604314
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGTTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351019477|gb|FQ429612.1|FQ429612
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349816072|gb|FQ399303.1|FQ399303
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351041001|gb|FQ443777.1|FQ443777
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349816179|gb|FQ403675.1|FQ403675
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349815328|gb|FQ400483.1|FQ400483
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351034264|gb|FQ448061.1|FQ448061
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGTTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|161717594|gb|FC066898.1|FC066898
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|30129333|gb|CB914672.1|CB914672
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349827064|gb|FQ421337.1|FQ421337
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGTTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349829875|gb|FQ422188.1|FQ422188
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349808752|gb|FQ406602.1|FQ406602
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349829450|gb|FQ419982.1|FQ419982
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|110729851|gb|EE106263.1|EE106263
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGTTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349807552|gb|FQ401917.1|FQ401917
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|351017764|gb|FQ436117.1|FQ436117
EST:     CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGTTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
EST: gi|349809458|gb|FQ411956.1|FQ411956
EST:     CTCGAATCTGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAG                         GACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT
genomic: CTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctcta ... tatattgcagGACAAAAGTGTGCTCAAATCTACTCAGCGCTTGGTTGCATTCACTATTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAAACCAGGCGTTAGATGAAATCATGACTGATTTTAACTCTAAGTTCCCTCGAATCCGCCATTTTAGACTCTGCACCTCCCTCCTCATGCTCTTGGAGgtaagctctaaccaaaccctaacacttctcatctctctctacccctttctctttgaattttaaaattcaccaaggttaggatgagggttagtgttagggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacccc