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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGTACTTTGCTTCCAAGTTGTTCTCTCCGAGAAAGCCGACTCCTTCTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttctctctatatcatctgtttttctttcctatgtgtatatatatgtatgtgtgtgtgttgtatacatgtgtcgtgtgatctggatgttgtgtta...

Basic information

species Vitis vinifera
transcript Vv07s0130g00170.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714627|gb|FC063587.1|FC063587
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
EST: gi|110701765|gb|EE079713.1|EE079713
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
EST: gi|110728716|gb|EE104530.1|EE104530
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
EST: gi|37185372|gb|CF604725.1|CF604725
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
EST: gi|352781182|gb|FQ466495.1|FQ466495
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
EST: gi|352776527|gb|FQ474829.1|FQ474829
EST:     CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTT                         GACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT
genomic: CTGACCCAGCTATTCAGATCTCCAATCTCTTCCAGAAAGCCGAGCCTCTTgtactcttct ... ttgtgttcagGACATGTGGGTTTATCTTTCTGAACAAGAGAAGTTCAGTGACTTCAATAGT