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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACACGTCCACCGGCGACCTTCCGGCATCCAATTCCGGCACCTTCTCTGAAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttcttttgcctcttttctcgtctttttgatttcttctttctttatttcattgttttttatcggtctgttgcccctttttttgcggcctgttctc...

Basic information

species Vitis vinifera
transcript Vv07s0129g01020.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g01020.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G18240.1 (Glycine max), 5'ss of exon 1
CGACACGTCCACCGGCGACCTTCCGGCATCCAATTCCGGCACCTTCTCTGAAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttcttttgcctcttttctcgtctttttgatttcttctttctttatttcattgttttttatcggtctgttgcccctttttttgcggcctgttctc-------------------------
                          | ||||||||||||  || ||| || || ||||| |||||||| || ||||| || |||||||||||||| |||| |||||||  ||  ||||  |  |||  | ||    | |||| | |  | ||| || |||  | | | | ||  |   |   || | |     |||                            
-------------------------CCCTCCAATTCCGGCGTCTACTCCGAGGGCGAGAAAGTCCTCGCCTACCACGGCCCTCGCATCTACGAAGCAAAGGCATCTTTCACTTCTCTCTCCTTCCgttctctttcaattttctctttcaacttctttttttcctcttgatttgccggttccacttgttcttttcgtttggaattttatagctaccgttaacgaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27755129|gb|CB035884.1|CB035884
EST:     AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAG                         GTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
genomic: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttct ... tatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
EST: gi|71857480|gb|DT006535.1|DT006535
EST:     AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAG                         GTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC
genomic: AAGGTGAGAAGGTCCTCGCTTATCACGGGCCCCGCATCTACGAAGCGAAGgtatctttct ... tatttgtaagGTCCAAAAGGCTGAATTTCGAAAGAAGGAGTGGAGATACTTTGTTCATTAC