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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTACTTATGAGGATCTGCAGCCAGATATTCAGCGTATTGCTAATGGAGATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattctagcctctgtggtcttaatataaatgtgtgtgctgtgtgactgtgtaagtgaatgttttttgattgttgggggtttgaatctgcag

Basic information

species Vitis vinifera
transcript Vv07s0129g00660.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G05510.1 (Glycine max), 5'ss of exon 1
TGGTTACTTATGAGGATCTGCAGCCAGATATTCAGCGTATTGCTAATGGAGATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattctagcctctgtggtcttaata-taaatgtgtgtgctgtgtgactgtgtaagtgaatgttttttgat---tgttgggggtttgaatctgcag----------------------------------------
| || || || ||||||||||| || ||||||||||| ||||| ||||| ||  ||||||| |||||||  |||||||| ||||||||||| || |||||||   |||  |   |  |  |  | | || | |||   | |     | |  | | | ||| | |  |  || ||   | |      || |||| ||                                           
TCGTGACCTACGAGGATCTGCAACCTGATATTCAGCGCATTGCAAATGGTGACAGCTCTCCCATCTTGTGCTCTCACCCAATCTCTGAGTTTCTCACCAGgtacaatt--aattttcgccggttaattaattaattaatatttcaggcgtatttatgagttactactaattaatatttatcatatattagaatgtgttttgtattttatggatggtgcttgaatgaattaaaattacag

upper sequence: Vv07s0129g00660.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G39780.1 (Glycine max), 5'ss of exon 1
TGGTTACTTATGAGGATCTGCAGCCAGATATTCAGCGTATTGCTAATGGAGATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgatt--ctagcctctgtggtct-taatataaatgtgtgtgctgtgtgactgtgtaagtgaatgttttttgattgttgggggtttgaatctgcag
| || ||||| ||||||||||| || |||||| |||| ||||| ||||| || |||||||| |||||||   ||||||| ||||| ||||| || |||||||  ||||   ||   | |  ||  | || ||| ||||  ||| || |||     | | | |||  ||  ||  ||   ||     || ||  | |||
TCGTCACTTACGAGGATCTGCAACCTGATATTGAGCGCATTGCAAATGGTGACCGCTCTCCCATCTTGTGCGCTCACCCAATCTCCGAGTTTCTCACCAGgtacgatttcttaatatttcaggcgtatagtatgaatgaatgtcctttgta----ttttactgatcgtgcttgaatgaatgaa---ttaaaattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161714657|gb|FC063892.1|FC063892
EST:     GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAG                         TTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
genomic: GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattct ... gaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
EST: gi|161713635|gb|FC062543.1|FC062543
EST:     GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAG                         TTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
genomic: GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattct ... gaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
EST: gi|161705588|gb|FC055767.1|FC055767
EST:     GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAG                         TTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
genomic: GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattct ... gaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
EST: gi|161715493|gb|FC069056.1|FC069056
EST:     GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAG                         TTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA
genomic: GATCGCTCTCCAATCTTGTCTTCTCACCCCATCTCTGAGTTCCTTACCAGgtctgattct ... gaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGA