1 5' 3' | 2 5' 3' |
GAGTGGGTGAAAGTAGGGTTGTCAGAAATGGGAGGAGGCAATGGCCAGAAGTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttctttcttctacttttcttcatgcttacccttctcagaaataaaaaagaacagaaaaatcgaaggaaatcatggaaggcccaaaagtcggattca...
species | Vitis vinifera |
transcript | Vv07s0129g00420.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAG GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGEST: gi|110416862|gb|EC982870.1|EC982870
genomic: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttcttt ... attttctcagGAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG
EST: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAG GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGEST: gi|110403184|gb|EC964475.1|EC964475
genomic: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttcttt ... attttctcagGAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG
EST: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAG GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAGEST: gi|110707891|gb|EE084804.1|EE084804
genomic: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttcttt ... attttctcagGAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG
EST: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAG GAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG
genomic: GTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttcttt ... attttctcagGAAGCCAGCTTGAGTCAAACAAGAAAGCAATGACAATCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGGTGAAAGTAGGGTTGTCAGAAATGGGAGGAGGCAATGGCCAGAAGTCGAAGACGGCGCGTGAGCGGAACATGGAGAAGACGAAAGCCGCCAAAGgtatttctttcttctacttttcttcatgcttacccttctcagaaataaaaaagaacagaaaaatcgaaggaaatcatggaaggcccaaaagtcggattca
- - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat