Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGCGAAACCCAAGCTTAAGCCTCTGCACTGGGACAAAGTACGGGCAACTTCGGATAGAGCCACAGTGTGGGACCAACTGAAATCGAGCTCCTTTCAgtaagtaaaccgttaatagttggaagatgctaacaaacattgatatacagactctgatcttgggtataactcacttgttttttcag

Basic information

species Vitis vinifera
transcript Vv07s0129g00220.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00220.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G17460.1 (Glycine max), 5'ss of exon 1
ATGGAGCGAAACCCAAGCTTAAGCCTCTGCACTGGGACAAAGTACGGGCAACTTCGGATAGAGCCACAGTGTGGGACCAACTGAAATCGAGCTCCTTTCAgtaagtaaaccg-ttaatagttggaagatgctaacaaacattgatatacag--actctgatcttgggtataactcacttgttttttcag-------------------
||||||| ||||||||| | ||| ||||||| ||||| |||||    || ||||||||  | ||||| |||||||||||  | ||||| ||||||||||||||||||||||| ||  |  |  ||  ||  | | ||     | ||   ||  | | |||  ||| | |      |||  | || |  |                   
ATGGAGCAAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTGTCTGCTACTTCGGACCGTGCCACTGTGTGGGACCAGTTAAAATCCAGCTCCTTTCAgtaagtaaaccgatttgtgatatgattataatgataacttgagttagttagttaatgtgagtttgtggaatgtgaactaatgttgttggttttgtggaatgcatatag